miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 40456 0.67 0.300504
Target:  5'- aCGCCGGCCguGGuCGAGCGcgUGCuCGUg- -3'
miRNA:   3'- -GCGGCCGG--CC-GCUCGUugACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 55508 0.67 0.314164
Target:  5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3'
miRNA:   3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 52304 0.66 0.345223
Target:  5'- aGCCGaGCuCGGCGAcGCGGCccaugUGCuCGCg- -3'
miRNA:   3'- gCGGC-CG-GCCGCU-CGUUG-----ACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 13863 0.66 0.361155
Target:  5'- aCGCCauccgGGCCGGuCGucaGGCGguACUGCUGCc- -3'
miRNA:   3'- -GCGG-----CCGGCC-GC---UCGU--UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 13928 0.69 0.219236
Target:  5'- -uCCGGCCGGCuGAGCuGCUuccgguaccGCCGCc- -3'
miRNA:   3'- gcGGCCGGCCG-CUCGuUGA---------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 58610 0.68 0.254149
Target:  5'- gCGCCGGCCGcgcccGCGcccGCGACgccgGCCGUc- -3'
miRNA:   3'- -GCGGCCGGC-----CGCu--CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 21382 0.67 0.314896
Target:  5'- gGCCGGCUGGCGccGCcuGAaaGCCGgaGa -3'
miRNA:   3'- gCGGCCGGCCGCu-CG--UUgaCGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 50221 0.66 0.365217
Target:  5'- aCGCCGgcuuccaGCCGaGCGgaugccaAGCAACggucgcggccucgaUGCCGCUGc -3'
miRNA:   3'- -GCGGC-------CGGC-CGC-------UCGUUG--------------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 18381 0.68 0.260394
Target:  5'- aGcCCGGCCGaGUuuuGcGCGGCUGCCuGCUGc -3'
miRNA:   3'- gC-GGCCGGC-CG---CuCGUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 28542 0.66 0.36931
Target:  5'- uGCCGuucGCCGG-GGGCGcccaGCCGCUGc -3'
miRNA:   3'- gCGGC---CGGCCgCUCGUuga-CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 8954 0.67 0.314896
Target:  5'- aGCCGGUCGGCGcGCuGCgUGUCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCuCGuUG-ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 38976 0.67 0.300504
Target:  5'- gCGCCGGCCGcgaucGCGAGCucgcGCUuGCC-CUu -3'
miRNA:   3'- -GCGGCCGGC-----CGCUCGu---UGA-CGGcGAc -5'
23874 3' -63.1 NC_005262.1 + 10852 0.67 0.329045
Target:  5'- uGCC-GCCGGCGAagcccagGCGGCgcagGCCGUc- -3'
miRNA:   3'- gCGGcCGGCCGCU-------CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48039 0.66 0.345223
Target:  5'- uCGCCGGCCGGC-AGguGCU-UCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcUCguUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 44337 0.66 0.352329
Target:  5'- gGCCGuCCGGUGAGCAucgaggccaacGCccagcgcuucagaUGCCGCg- -3'
miRNA:   3'- gCGGCcGGCCGCUCGU-----------UG-------------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 58716 0.66 0.353125
Target:  5'- cCGCCGaGCCGGuCGcacGCGccGCcGCCGCg- -3'
miRNA:   3'- -GCGGC-CGGCC-GCu--CGU--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 9932 0.7 0.208542
Target:  5'- uGUCGGCCGGCuuGAGCGcgaucuGCUuGCCGUc- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGU------UGA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 30431 0.69 0.213831
Target:  5'- aCGaucaCGGCCGGCGgguugucgaucGGCGGCacggUGCCGCg- -3'
miRNA:   3'- -GCg---GCCGGCCGC-----------UCGUUG----ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 51216 0.69 0.230395
Target:  5'- aCGCCucGCCGGCGgcagcAGCAGCUcgacgagcgccGCCGCg- -3'
miRNA:   3'- -GCGGc-CGGCCGC-----UCGUUGA-----------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 22124 0.68 0.254149
Target:  5'- uGCCGguGCCGGCG-GCGAUgacggcGCCGCc- -3'
miRNA:   3'- gCGGC--CGGCCGCuCGUUGa-----CGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.