miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 5' -60.6 NC_005262.1 + 30500 0.66 0.539162
Target:  5'- aCGGCUUCGG-CGCCcggCGugCGCGc- -3'
miRNA:   3'- gGUCGAGGCUgGCGGa--GCugGCGCac -5'
23875 5' -60.6 NC_005262.1 + 53705 0.66 0.539162
Target:  5'- gCAGaacCCGGCCGCgUCGaagGCCGUGg- -3'
miRNA:   3'- gGUCga-GGCUGGCGgAGC---UGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 51358 0.66 0.539162
Target:  5'- gCAGCUCgGcACCGCgC-CGuCCGCGa- -3'
miRNA:   3'- gGUCGAGgC-UGGCG-GaGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 51284 0.66 0.539162
Target:  5'- aCCGGCcgCCGGCUGCUgCGcauGCCGCu-- -3'
miRNA:   3'- -GGUCGa-GGCUGGCGGaGC---UGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 39302 0.66 0.539162
Target:  5'- gCAGCUCgGACUGaCCaUCGAC-GCGa- -3'
miRNA:   3'- gGUCGAGgCUGGC-GG-AGCUGgCGCac -5'
23875 5' -60.6 NC_005262.1 + 2817 0.66 0.536141
Target:  5'- --cGCUCC-ACCugcGCCUCGACCucguuugcgcgcugGCGUGc -3'
miRNA:   3'- gguCGAGGcUGG---CGGAGCUGG--------------CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 54618 0.66 0.528115
Target:  5'- aUCuGCgCCGACCGCCaugCGugaaggcGCCGgGUGa -3'
miRNA:   3'- -GGuCGaGGCUGGCGGa--GC-------UGGCgCAC- -5'
23875 5' -60.6 NC_005262.1 + 56431 0.66 0.528115
Target:  5'- aCGGC-CCGACCGUCguggCGACgccuaagCGCGg- -3'
miRNA:   3'- gGUCGaGGCUGGCGGa---GCUG-------GCGCac -5'
23875 5' -60.6 NC_005262.1 + 29745 0.66 0.519139
Target:  5'- gCCGGCgcucCCGGcuaacCCGCCUCaACCGCc-- -3'
miRNA:   3'- -GGUCGa---GGCU-----GGCGGAGcUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 46640 0.66 0.519139
Target:  5'- gCGGCcuugCCGGCCuUCUCGAUUGCGa- -3'
miRNA:   3'- gGUCGa---GGCUGGcGGAGCUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 51376 0.66 0.519139
Target:  5'- aUCGGCUCgGcuACCGUCUCGAUCGaCa-- -3'
miRNA:   3'- -GGUCGAGgC--UGGCGGAGCUGGC-Gcac -5'
23875 5' -60.6 NC_005262.1 + 60022 0.66 0.518146
Target:  5'- aCCGGCUCCGuucucAUCGUcgaagggCUCGAUCGCcUGa -3'
miRNA:   3'- -GGUCGAGGC-----UGGCG-------GAGCUGGCGcAC- -5'
23875 5' -60.6 NC_005262.1 + 16385 0.66 0.513189
Target:  5'- aCCAGUUuugaacccgccccggCCGGCCGCCgggauucugCG-CCGCGa- -3'
miRNA:   3'- -GGUCGA---------------GGCUGGCGGa--------GCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 11440 0.66 0.509238
Target:  5'- uCCAGCgucCCGuCCGCCUucauccggCGAUaCGCGUc -3'
miRNA:   3'- -GGUCGa--GGCuGGCGGA--------GCUG-GCGCAc -5'
23875 5' -60.6 NC_005262.1 + 6453 0.66 0.509238
Target:  5'- uUCGGCUCCGGCgagaCGCCggcaUCGAC-GCGg- -3'
miRNA:   3'- -GGUCGAGGCUG----GCGG----AGCUGgCGCac -5'
23875 5' -60.6 NC_005262.1 + 16294 0.66 0.509238
Target:  5'- gCC-GCUCgCGGCgUGCaaccgaUCGACCGCGUu -3'
miRNA:   3'- -GGuCGAG-GCUG-GCGg-----AGCUGGCGCAc -5'
23875 5' -60.6 NC_005262.1 + 49281 0.66 0.509238
Target:  5'- gCCAuGCUguugCCGAUCGCCUUGuAgCGCGg- -3'
miRNA:   3'- -GGU-CGA----GGCUGGCGGAGC-UgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 17167 0.66 0.499418
Target:  5'- gCCGGCaa-GGCCGCgCgcgaggacgCGACCGCGUu -3'
miRNA:   3'- -GGUCGaggCUGGCG-Ga--------GCUGGCGCAc -5'
23875 5' -60.6 NC_005262.1 + 59010 0.66 0.499418
Target:  5'- --cGCUUCGACCGUCUgcaaGCCGCGg- -3'
miRNA:   3'- gguCGAGGCUGGCGGAgc--UGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 29613 0.66 0.489682
Target:  5'- gCAGCUCgGAaugcagCGUCUCGACCuuCGUGc -3'
miRNA:   3'- gGUCGAGgCUg-----GCGGAGCUGGc-GCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.