miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 40246 0.66 0.900699
Target:  5'- gCGGCGggCGGUUGgUcaGUCUGCGCGg -3'
miRNA:   3'- aGCUGCa-GCUAGCgAagUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 51189 0.66 0.900699
Target:  5'- aCGACGcggCGGccCGCUggagCCGCGCGg -3'
miRNA:   3'- aGCUGCa--GCUa-GCGAaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 12452 0.66 0.900699
Target:  5'- aCGAuccuCGUCGAgacgUCGC-UCAcggggcgCCGCGCGg -3'
miRNA:   3'- aGCU----GCAGCU----AGCGaAGUa------GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 38751 0.66 0.900699
Target:  5'- cCGugGUgugCGAUCGUgUCGUgUCGCACu -3'
miRNA:   3'- aGCugCA---GCUAGCGaAGUA-GGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 30496 0.66 0.900699
Target:  5'- cUCGACGgcuUCGG-CGCccggCGUgCGCGCGa -3'
miRNA:   3'- -AGCUGC---AGCUaGCGaa--GUAgGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 13580 0.66 0.900016
Target:  5'- gCGGCGuUCGGUCGUgagcaucUUCGUCCaGC-CGc -3'
miRNA:   3'- aGCUGC-AGCUAGCG-------AAGUAGG-CGuGC- -5'
23877 3' -52.9 NC_005262.1 + 3700 0.66 0.899332
Target:  5'- cCGACcauGUUGAUCGUgcccgucagcgCGUCgCGCGCGg -3'
miRNA:   3'- aGCUG---CAGCUAGCGaa---------GUAG-GCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 3355 0.66 0.89376
Target:  5'- -aGGCGcagcgcguucUCGGUCGCUUgGUUCGCGa- -3'
miRNA:   3'- agCUGC----------AGCUAGCGAAgUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 5229 0.66 0.89376
Target:  5'- cCGGCGUgcCGAUCaGCUUCucgCCGC-Cu -3'
miRNA:   3'- aGCUGCA--GCUAG-CGAAGua-GGCGuGc -5'
23877 3' -52.9 NC_005262.1 + 17869 0.66 0.89376
Target:  5'- cUCGACGUagcccgacuUGAUCgGCgcgcgCAUCCGguCGg -3'
miRNA:   3'- -AGCUGCA---------GCUAG-CGaa---GUAGGCguGC- -5'
23877 3' -52.9 NC_005262.1 + 27501 0.66 0.89376
Target:  5'- cCGAaGUCGAccgagguguUCGCgUCG-CCGCGCGc -3'
miRNA:   3'- aGCUgCAGCU---------AGCGaAGUaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 2831 0.66 0.89376
Target:  5'- cUCGACcUCGuuugcgCGCUggCGUgcCCGCACGa -3'
miRNA:   3'- -AGCUGcAGCua----GCGAa-GUA--GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 48085 0.66 0.88656
Target:  5'- gCGccACGUCGAgcgcauagCGCUgcUCGUCCGUcucgGCGa -3'
miRNA:   3'- aGC--UGCAGCUa-------GCGA--AGUAGGCG----UGC- -5'
23877 3' -52.9 NC_005262.1 + 24329 0.66 0.88656
Target:  5'- gUCGGCG-CGAUCgacaugcgGCUcugCGUCgGCGCGc -3'
miRNA:   3'- -AGCUGCaGCUAG--------CGAa--GUAGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 63305 0.66 0.879105
Target:  5'- cUCGGCGUCGA-CGUggaacaCGCGCGc -3'
miRNA:   3'- -AGCUGCAGCUaGCGaaguagGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 7700 0.66 0.877584
Target:  5'- aCGcAUGUCGAUCGCcgagaaacggcCGUCCGCGa- -3'
miRNA:   3'- aGC-UGCAGCUAGCGaa---------GUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 22383 0.66 0.871399
Target:  5'- cCGGCG-CgGAUCGCgaUCAUCC-CGCGu -3'
miRNA:   3'- aGCUGCaG-CUAGCGa-AGUAGGcGUGC- -5'
23877 3' -52.9 NC_005262.1 + 40463 0.66 0.871399
Target:  5'- cCGugGUCGAgCGCgugcUCGUgCGCGgCGc -3'
miRNA:   3'- aGCugCAGCUaGCGa---AGUAgGCGU-GC- -5'
23877 3' -52.9 NC_005262.1 + 9942 0.66 0.871399
Target:  5'- cUUGAgCG-CGAUCuGCUUgcCGUCCGCGCc -3'
miRNA:   3'- -AGCU-GCaGCUAG-CGAA--GUAGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 7638 0.66 0.868248
Target:  5'- aCGGCGUCGAUCaucugguucagcuuGCUguucgggUCGcUCgGCGCGg -3'
miRNA:   3'- aGCUGCAGCUAG--------------CGA-------AGU-AGgCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.