miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 2067 0.66 0.854181
Target:  5'- aGCCaGCgugCGCACAUgGucgcUUCCGGGgGCa -3'
miRNA:   3'- -CGG-CG---GCGUGUAgCuu--AAGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 20888 0.66 0.852502
Target:  5'- aGCCGCCGCACGaCGAuacgcaccaucUCCccGUaGCu -3'
miRNA:   3'- -CGGCGGCGUGUaGCUua---------AGGucCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 58621 0.66 0.851658
Target:  5'- -gCGCUGCACcgucaggcucggcaGUCGAGcggCCGGGcGCg -3'
miRNA:   3'- cgGCGGCGUG--------------UAGCUUaa-GGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 57311 0.66 0.845692
Target:  5'- cGCCGCaucgaGCAgAUCGGcaaccgUCUGGGcGCg -3'
miRNA:   3'- -CGGCGg----CGUgUAGCUua----AGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 51957 0.66 0.845692
Target:  5'- gGCCGCuCGCGCGcgccugcgcUCGAAacugUCCGGuucGCa -3'
miRNA:   3'- -CGGCG-GCGUGU---------AGCUUa---AGGUCca-CG- -5'
23879 5' -53.7 NC_005262.1 + 25569 0.66 0.845692
Target:  5'- aCCGCCuGCACAUcucCGAGUUCgGGaaaaucUGCg -3'
miRNA:   3'- cGGCGG-CGUGUA---GCUUAAGgUCc-----ACG- -5'
23879 5' -53.7 NC_005262.1 + 51148 0.66 0.83698
Target:  5'- cGCgCGCCGCGCG-CGcuucUUCUucacGGUGCc -3'
miRNA:   3'- -CG-GCGGCGUGUaGCuu--AAGGu---CCACG- -5'
23879 5' -53.7 NC_005262.1 + 63274 0.66 0.83698
Target:  5'- aGCCGCCGCcuGC-UUGAcggCCGGcUGCu -3'
miRNA:   3'- -CGGCGGCG--UGuAGCUuaaGGUCcACG- -5'
23879 5' -53.7 NC_005262.1 + 33388 0.66 0.828054
Target:  5'- cGCCGUccagCGCACGcggcUCGugcuGUacUCgGGGUGCg -3'
miRNA:   3'- -CGGCG----GCGUGU----AGCu---UA--AGgUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 61043 0.66 0.828054
Target:  5'- cGCCGCCGUGC--UGAAgcgcaUCCGGGaccucgagGCg -3'
miRNA:   3'- -CGGCGGCGUGuaGCUUa----AGGUCCa-------CG- -5'
23879 5' -53.7 NC_005262.1 + 58673 0.66 0.828054
Target:  5'- cGCCGcCCGUcgcgcauggcagGCAUCGugaaCCGGGcGCg -3'
miRNA:   3'- -CGGC-GGCG------------UGUAGCuuaaGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 30134 0.66 0.828054
Target:  5'- uGCCGCUGCugGUCGccgaagcgCCGgcGGaUGCc -3'
miRNA:   3'- -CGGCGGCGugUAGCuuaa----GGU--CC-ACG- -5'
23879 5' -53.7 NC_005262.1 + 15259 0.66 0.828054
Target:  5'- gGCUcCUGCGCAUCGAgacgcgAUUgCAGGUcgaGCg -3'
miRNA:   3'- -CGGcGGCGUGUAGCU------UAAgGUCCA---CG- -5'
23879 5' -53.7 NC_005262.1 + 12137 0.66 0.828054
Target:  5'- aUCGCCGCGC-UgGAGagCCAGGUu- -3'
miRNA:   3'- cGGCGGCGUGuAgCUUaaGGUCCAcg -5'
23879 5' -53.7 NC_005262.1 + 50416 0.67 0.809596
Target:  5'- -gCGCCGCGgAgcgCGAGggCCGcGUGCa -3'
miRNA:   3'- cgGCGGCGUgUa--GCUUaaGGUcCACG- -5'
23879 5' -53.7 NC_005262.1 + 36019 0.67 0.809596
Target:  5'- uGCCGUCGCAuCAUCGug--CCGcGUGg -3'
miRNA:   3'- -CGGCGGCGU-GUAGCuuaaGGUcCACg -5'
23879 5' -53.7 NC_005262.1 + 23612 0.67 0.809596
Target:  5'- aGCUGCUGCACGUCaucAUUCC-GcUGCu -3'
miRNA:   3'- -CGGCGGCGUGUAGcu-UAAGGuCcACG- -5'
23879 5' -53.7 NC_005262.1 + 23646 0.67 0.809596
Target:  5'- -aCGCCGCACccug---UCCGGGUuGCa -3'
miRNA:   3'- cgGCGGCGUGuagcuuaAGGUCCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 20738 0.67 0.809596
Target:  5'- uGCCGCgGCGCG-CGGugccggCCGGGUc- -3'
miRNA:   3'- -CGGCGgCGUGUaGCUuaa---GGUCCAcg -5'
23879 5' -53.7 NC_005262.1 + 42225 0.67 0.809596
Target:  5'- aGCCguaGCCGC-CcUCGu-UUCCAGGcgGCg -3'
miRNA:   3'- -CGG---CGGCGuGuAGCuuAAGGUCCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.