miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23881 5' -54.9 NC_005262.1 + 24743 0.66 0.817819
Target:  5'- cGCGAucGGCGUGCgGC-CGAAguggauucagcaccgCGGCGa -3'
miRNA:   3'- -CGCUc-UUGCACGgCGaGCUUa--------------GCCGC- -5'
23881 5' -54.9 NC_005262.1 + 21828 0.66 0.816907
Target:  5'- cGCuGAGAACccgcuucagaUGCUGCUCcagcaggugcagGGAUCGGCGc -3'
miRNA:   3'- -CG-CUCUUGc---------ACGGCGAG------------CUUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 22421 0.66 0.816907
Target:  5'- cGCGuAGGucagcCGUGCCGUUCGugccGUCcGCGa -3'
miRNA:   3'- -CGC-UCUu----GCACGGCGAGCu---UAGcCGC- -5'
23881 5' -54.9 NC_005262.1 + 22571 0.66 0.814163
Target:  5'- uCGucauGAGCGUGCCggcagucauacgguGCUCGAAgCGGUc -3'
miRNA:   3'- cGCu---CUUGCACGG--------------CGAGCUUaGCCGc -5'
23881 5' -54.9 NC_005262.1 + 28852 0.66 0.807693
Target:  5'- cGCGucGAACuUGCCGC-CGAAgaacaCGGCc -3'
miRNA:   3'- -CGCu-CUUGcACGGCGaGCUUa----GCCGc -5'
23881 5' -54.9 NC_005262.1 + 45672 0.66 0.807693
Target:  5'- uCGAGcgcAugGUGCCGCacuucgugcgcaUCGAGggcCGGCa -3'
miRNA:   3'- cGCUC---UugCACGGCG------------AGCUUa--GCCGc -5'
23881 5' -54.9 NC_005262.1 + 3951 0.66 0.807693
Target:  5'- cGCGAc-GCGaucGCCGUUUGAGUCGaGCa -3'
miRNA:   3'- -CGCUcuUGCa--CGGCGAGCUUAGC-CGc -5'
23881 5' -54.9 NC_005262.1 + 59299 0.66 0.807693
Target:  5'- aCGAGGACaUGCCGgaCGg--CGGCu -3'
miRNA:   3'- cGCUCUUGcACGGCgaGCuuaGCCGc -5'
23881 5' -54.9 NC_005262.1 + 32869 0.66 0.807693
Target:  5'- uGCGGcgccGAGCuGUucGCCGCgUCGAacGUCGGCc -3'
miRNA:   3'- -CGCU----CUUG-CA--CGGCG-AGCU--UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 53964 0.66 0.807693
Target:  5'- cGUGGGAACa-GUCGCUCaaGAcgcUCGGCGa -3'
miRNA:   3'- -CGCUCUUGcaCGGCGAG--CUu--AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 53987 0.66 0.807693
Target:  5'- aCGA-AGCG-GUCGCcCGAGUUGGCGu -3'
miRNA:   3'- cGCUcUUGCaCGGCGaGCUUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 16572 0.66 0.798303
Target:  5'- cGCGGaugccGAGCaggcgcguGUGCUGgUCGAggCGGCGa -3'
miRNA:   3'- -CGCU-----CUUG--------CACGGCgAGCUuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 2023 0.66 0.798303
Target:  5'- gGCGcugcuuCGUGCUGCUCGAcggGGCGc -3'
miRNA:   3'- -CGCucuu--GCACGGCGAGCUuagCCGC- -5'
23881 5' -54.9 NC_005262.1 + 6464 0.66 0.782933
Target:  5'- cCGGGAACGgcgcgcccagacgguUGCCgaucuGCUCGAugCGGCGc -3'
miRNA:   3'- cGCUCUUGC---------------ACGG-----CGAGCUuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 15706 0.66 0.779029
Target:  5'- aCGAGcAGCGcuaUG-CGCUCGAcgUGGCGc -3'
miRNA:   3'- cGCUC-UUGC---ACgGCGAGCUuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 40911 0.66 0.779029
Target:  5'- uCGAGGAuCGUGCUcugccgGCUCGAAguccgaGGCa -3'
miRNA:   3'- cGCUCUU-GCACGG------CGAGCUUag----CCGc -5'
23881 5' -54.9 NC_005262.1 + 60376 0.67 0.769168
Target:  5'- gGCGGcGAAgGUcgccgGCCGCaaGAucGUCGGCGg -3'
miRNA:   3'- -CGCU-CUUgCA-----CGGCGagCU--UAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 11483 0.67 0.769168
Target:  5'- cGCGAGcacAugG-GCCGCgucgcCGAGcUCGGCu -3'
miRNA:   3'- -CGCUC---UugCaCGGCGa----GCUU-AGCCGc -5'
23881 5' -54.9 NC_005262.1 + 1030 0.67 0.769168
Target:  5'- uUGAGGcCGUGgCGUUCGAcaauaggcgcgAUCGGCc -3'
miRNA:   3'- cGCUCUuGCACgGCGAGCU-----------UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 21177 0.67 0.769168
Target:  5'- aGCGAGcGACGaucGCCGCaugaCGGAgCGGCa -3'
miRNA:   3'- -CGCUC-UUGCa--CGGCGa---GCUUaGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.