miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 3' -55 NC_005262.1 + 2976 0.65 0.788763
Target:  5'- -cGuaGGCCGGCGCaaACUcu-GCGACa -3'
miRNA:   3'- gaCcgCCGGCUGCGg-UGAaauUGCUG- -5'
23887 3' -55 NC_005262.1 + 24098 0.65 0.788763
Target:  5'- --cGCGGUCGAUGCgGCg--GACGGa -3'
miRNA:   3'- gacCGCCGGCUGCGgUGaaaUUGCUg -5'
23887 3' -55 NC_005262.1 + 42218 0.65 0.788763
Target:  5'- -cGGCGGCaCGACGuacCCGCUc--GCGGu -3'
miRNA:   3'- gaCCGCCG-GCUGC---GGUGAaauUGCUg -5'
23887 3' -55 NC_005262.1 + 14159 0.65 0.788763
Target:  5'- -aGGCcGCCGAUcgcgagGCCACcgagcgccuggUUAGCGACg -3'
miRNA:   3'- gaCCGcCGGCUG------CGGUGa----------AAUUGCUG- -5'
23887 3' -55 NC_005262.1 + 53456 0.66 0.778922
Target:  5'- -cGGC-GCCGGCGUCGaggacAACGGCg -3'
miRNA:   3'- gaCCGcCGGCUGCGGUgaaa-UUGCUG- -5'
23887 3' -55 NC_005262.1 + 14016 0.66 0.778922
Target:  5'- -gGGCGuCCGGCGCgGC---AGCGGCc -3'
miRNA:   3'- gaCCGCcGGCUGCGgUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 40353 0.66 0.778922
Target:  5'- -cGGCGcGCUGAUGUCGaucgucGGCGACg -3'
miRNA:   3'- gaCCGC-CGGCUGCGGUgaaa--UUGCUG- -5'
23887 3' -55 NC_005262.1 + 6770 0.66 0.778922
Target:  5'- gUGGCcgGGCaCGAUGCCGaugauCUUgaagucgAACGACg -3'
miRNA:   3'- gACCG--CCG-GCUGCGGU-----GAAa------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 8146 0.66 0.778922
Target:  5'- -cGGCGuGCCGGacgcgGCCACgagcgcGCGGCc -3'
miRNA:   3'- gaCCGC-CGGCUg----CGGUGaaau--UGCUG- -5'
23887 3' -55 NC_005262.1 + 14370 0.66 0.77793
Target:  5'- aCUGGCGGCgGugauaaGCCGCaugugcugaucggUUUGGCGGu -3'
miRNA:   3'- -GACCGCCGgCug----CGGUG-------------AAAUUGCUg -5'
23887 3' -55 NC_005262.1 + 7651 0.66 0.77793
Target:  5'- -cGGCGG-CGACGgcuaucuCCGCg--AGCGGCa -3'
miRNA:   3'- gaCCGCCgGCUGC-------GGUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 17336 0.66 0.77793
Target:  5'- --cGUGGCCGGCGCgGCaUUcggguccggcgcgGGCGGCg -3'
miRNA:   3'- gacCGCCGGCUGCGgUGaAA-------------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 22109 0.66 0.768932
Target:  5'- -cGGCauagauGCCGAUGCCGgUgccGGCGGCg -3'
miRNA:   3'- gaCCGc-----CGGCUGCGGUgAaa-UUGCUG- -5'
23887 3' -55 NC_005262.1 + 4837 0.66 0.768932
Target:  5'- -cGGCGGCCGGCugguucgacuGCUGCgcgc-CGACc -3'
miRNA:   3'- gaCCGCCGGCUG----------CGGUGaaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 31737 0.66 0.768932
Target:  5'- -cGGCGGUCGcAUGUCGCgcaAGCGcACg -3'
miRNA:   3'- gaCCGCCGGC-UGCGGUGaaaUUGC-UG- -5'
23887 3' -55 NC_005262.1 + 29964 0.66 0.765907
Target:  5'- -cGGCGGCgaaggugccaaaucUGGCaCCACg--GACGACg -3'
miRNA:   3'- gaCCGCCG--------------GCUGcGGUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 37866 0.66 0.758802
Target:  5'- -cGGaaaaGUCGGCGUCGCgcgUGGCGACg -3'
miRNA:   3'- gaCCgc--CGGCUGCGGUGaa-AUUGCUG- -5'
23887 3' -55 NC_005262.1 + 2026 0.66 0.758802
Target:  5'- gCUGGuCGGUCGGCGCgUGCU---ACGAg -3'
miRNA:   3'- -GACC-GCCGGCUGCG-GUGAaauUGCUg -5'
23887 3' -55 NC_005262.1 + 15914 0.66 0.758802
Target:  5'- gUGGC-GCCGcgauGCGCCGCag-AGCGAg -3'
miRNA:   3'- gACCGcCGGC----UGCGGUGaaaUUGCUg -5'
23887 3' -55 NC_005262.1 + 44882 0.66 0.752662
Target:  5'- gCUGGCcaaggaccaagagaaGGCCGugGUCgggACUggauGCGGCg -3'
miRNA:   3'- -GACCG---------------CCGGCugCGG---UGAaau-UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.