miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 3' -59.5 NC_005262.1 + 16870 0.66 0.530034
Target:  5'- uGCAGGCGcccGGCcGCGCGCCggGCCGc -3'
miRNA:   3'- cUGUCCGUacuCCGcUGCGUGG--CGGU- -5'
23895 3' -59.5 NC_005262.1 + 43275 0.66 0.530034
Target:  5'- cGAguGGgGUGAGGuCGuCGCGagCGCCGc -3'
miRNA:   3'- -CUguCCgUACUCC-GCuGCGUg-GCGGU- -5'
23895 3' -59.5 NC_005262.1 + 43101 0.66 0.519752
Target:  5'- -cCGGGCAaGAGGCauuccUGCACCGCaCGa -3'
miRNA:   3'- cuGUCCGUaCUCCGcu---GCGUGGCG-GU- -5'
23895 3' -59.5 NC_005262.1 + 12554 0.66 0.518729
Target:  5'- cGGCAGGUcgc-GGCGGCGCucgucgagcugcuGCUGCCGc -3'
miRNA:   3'- -CUGUCCGuacuCCGCUGCG-------------UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 35901 0.66 0.513621
Target:  5'- gGACAGGUAcuUGAGGagggcggucuuggcuCGGcCGCcuuGCCGCCGu -3'
miRNA:   3'- -CUGUCCGU--ACUCC---------------GCU-GCG---UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 35513 0.66 0.50955
Target:  5'- uGCGcGCAU-AGGCGACaGCGCCgGCCGu -3'
miRNA:   3'- cUGUcCGUAcUCCGCUG-CGUGG-CGGU- -5'
23895 3' -59.5 NC_005262.1 + 30081 0.66 0.499433
Target:  5'- cGACGccGGCAaGAagGGCGACGacacgccgGCCGCCGc -3'
miRNA:   3'- -CUGU--CCGUaCU--CCGCUGCg-------UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 46902 0.66 0.489405
Target:  5'- uGCGGGCgGUGcGGUGugGUGCgGCCc -3'
miRNA:   3'- cUGUCCG-UACuCCGCugCGUGgCGGu -5'
23895 3' -59.5 NC_005262.1 + 46655 0.66 0.489405
Target:  5'- cGACAGcggcaGCAUGGcgccGGCaccGACGC-CCGCCGa -3'
miRNA:   3'- -CUGUC-----CGUACU----CCG---CUGCGuGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 10251 0.66 0.480462
Target:  5'- gGACaAGGCGagcggcgacaucaagGAGGCGACugaaugGCACCGCg- -3'
miRNA:   3'- -CUG-UCCGUa--------------CUCCGCUG------CGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 17558 0.66 0.479473
Target:  5'- aGGC-GGCAgccGcGGCGGCGCGCgaaGCCGa -3'
miRNA:   3'- -CUGuCCGUa--CuCCGCUGCGUGg--CGGU- -5'
23895 3' -59.5 NC_005262.1 + 53471 0.66 0.479473
Target:  5'- gGACAacGGCGUGAaGUGGCucgGCACgGCCGa -3'
miRNA:   3'- -CUGU--CCGUACUcCGCUG---CGUGgCGGU- -5'
23895 3' -59.5 NC_005262.1 + 55061 0.66 0.479473
Target:  5'- cGACGGGCAUgGAGGa---GCGCCGgCu -3'
miRNA:   3'- -CUGUCCGUA-CUCCgcugCGUGGCgGu -5'
23895 3' -59.5 NC_005262.1 + 38534 0.67 0.469641
Target:  5'- uGCGGuGCcaGAGGCGGCGCAggaGCCGg -3'
miRNA:   3'- cUGUC-CGuaCUCCGCUGCGUgg-CGGU- -5'
23895 3' -59.5 NC_005262.1 + 41299 0.67 0.469641
Target:  5'- cGACaucaAGGUAUGGcGCGGCGCgAUUGCCGa -3'
miRNA:   3'- -CUG----UCCGUACUcCGCUGCG-UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 32341 0.67 0.469641
Target:  5'- aGGCAGGCGUGAucGCcuACgGCACgGCCAa -3'
miRNA:   3'- -CUGUCCGUACUc-CGc-UG-CGUGgCGGU- -5'
23895 3' -59.5 NC_005262.1 + 14028 0.67 0.469641
Target:  5'- cGGCAgcGGCcgGAgccucgGGCGcGgGCGCCGCCGg -3'
miRNA:   3'- -CUGU--CCGuaCU------CCGC-UgCGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 26622 0.67 0.459913
Target:  5'- cGCGGGCAaaucGAaGCGcccgcguagcugGCGCACCGCCu -3'
miRNA:   3'- cUGUCCGUa---CUcCGC------------UGCGUGGCGGu -5'
23895 3' -59.5 NC_005262.1 + 58597 0.67 0.459913
Target:  5'- aAUGGGCugAUGGGGCGccucgaugcGCuGCACCGUCAg -3'
miRNA:   3'- cUGUCCG--UACUCCGC---------UG-CGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 49419 0.67 0.459913
Target:  5'- cGGC-GGCAUG-GGCGaccGCGCACuCGCgAa -3'
miRNA:   3'- -CUGuCCGUACuCCGC---UGCGUG-GCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.