miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 5' -56.1 NC_005262.1 + 14606 0.66 0.708299
Target:  5'- aGCAUGcCGGag-AUCAUCGCCGUg-- -3'
miRNA:   3'- gUGUAC-GCCgaaUAGUGGCGGCGguc -5'
23895 5' -56.1 NC_005262.1 + 13722 0.66 0.69759
Target:  5'- gACGUGCuGGUcgGUgGCaCGCCguGCCAGg -3'
miRNA:   3'- gUGUACG-CCGaaUAgUG-GCGG--CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 63453 0.66 0.69759
Target:  5'- aGCAgcCGGagccgGUCACUGUCGCCAGc -3'
miRNA:   3'- gUGUacGCCgaa--UAGUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 3181 0.66 0.69759
Target:  5'- nGCGUGCgcauGGCgu-UCGCCGUgcccuguauCGCCGGg -3'
miRNA:   3'- gUGUACG----CCGaauAGUGGCG---------GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 34314 0.66 0.69759
Target:  5'- -cCAUGCGGCUgaugugcuUCGCCuUCGCCu- -3'
miRNA:   3'- guGUACGCCGAau------AGUGGcGGCGGuc -5'
23895 5' -56.1 NC_005262.1 + 46113 0.66 0.69759
Target:  5'- cCACGgcCGGCUUcuUCGCCGCUuCCAGc -3'
miRNA:   3'- -GUGUacGCCGAAu-AGUGGCGGcGGUC- -5'
23895 5' -56.1 NC_005262.1 + 13478 0.66 0.686818
Target:  5'- ----cGCGGCggg-CGCUGCgGCCGGc -3'
miRNA:   3'- guguaCGCCGaauaGUGGCGgCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 30177 0.66 0.686818
Target:  5'- gCGCcgGCGGCUUuucCugCGaCGUCGGg -3'
miRNA:   3'- -GUGuaCGCCGAAua-GugGCgGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 60376 0.66 0.686818
Target:  5'- ----gGCGGCgaagGUCGCCGgCCGCaAGa -3'
miRNA:   3'- guguaCGCCGaa--UAGUGGC-GGCGgUC- -5'
23895 5' -56.1 NC_005262.1 + 30131 0.66 0.686818
Target:  5'- -uCGUGCcGCUgcugGUCGCCGaagCGCCGGc -3'
miRNA:   3'- guGUACGcCGAa---UAGUGGCg--GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 29866 0.66 0.685737
Target:  5'- cCGCGUgcccgccGCGaGCUcgagCACCGCCGCUAc -3'
miRNA:   3'- -GUGUA-------CGC-CGAaua-GUGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 13391 0.66 0.675994
Target:  5'- gCGCuccGCGGCgcugAUCGCCGCgcgguucgcguCGCCAc -3'
miRNA:   3'- -GUGua-CGCCGaa--UAGUGGCG-----------GCGGUc -5'
23895 5' -56.1 NC_005262.1 + 61030 0.66 0.66513
Target:  5'- aGgAUGCGGCa---C-CCGCCGCCGu -3'
miRNA:   3'- gUgUACGCCGaauaGuGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 1217 0.67 0.654235
Target:  5'- aGCAgaagGCGGCaaagcUCGCCGCCuccgaCCAGg -3'
miRNA:   3'- gUGUa---CGCCGaau--AGUGGCGGc----GGUC- -5'
23895 5' -56.1 NC_005262.1 + 14062 0.67 0.64332
Target:  5'- ----aGUGGCccaaCGCCGCCGCCGu -3'
miRNA:   3'- guguaCGCCGaauaGUGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 45118 0.67 0.64332
Target:  5'- gCGgGUGCcGCgaa-CACCGCgCGCCAGa -3'
miRNA:   3'- -GUgUACGcCGaauaGUGGCG-GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 52202 0.67 0.64332
Target:  5'- -uCGUGUGGaa-GUCgcucgagcgcugGCCGCCGCCGGc -3'
miRNA:   3'- guGUACGCCgaaUAG------------UGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 22923 0.67 0.64332
Target:  5'- --uGUGCGGU-----GCCGCUGCCGGc -3'
miRNA:   3'- gugUACGCCGaauagUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 24341 0.67 0.632394
Target:  5'- gACAUGCGGCUcugcGUCGgCG-CGCCuGa -3'
miRNA:   3'- gUGUACGCCGAa---UAGUgGCgGCGGuC- -5'
23895 5' -56.1 NC_005262.1 + 12121 0.67 0.632394
Target:  5'- -cCGUGCGcGCgagcagAUCGCCGCgcuggagaGCCAGg -3'
miRNA:   3'- guGUACGC-CGaa----UAGUGGCGg-------CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.