miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 22422 0.66 0.416042
Target:  5'- --aGCGCCgCCUGCUcGCcgGCaaccCCGUGGa -3'
miRNA:   3'- cuaCGCGG-GGACGAaCG--CGc---GGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 17085 0.66 0.416042
Target:  5'- --cGCGCCCgUcgacGCg-GCGgGCCGCGa -3'
miRNA:   3'- cuaCGCGGGgA----CGaaCGCgCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 23675 0.66 0.407172
Target:  5'- gGAUGcCGCCCgaGCg-GCGCG-UGUGGg -3'
miRNA:   3'- -CUAC-GCGGGgaCGaaCGCGCgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6177 0.66 0.407172
Target:  5'- --cGCGCUCCUGCgccucGCGgucauaGgCGCGGa -3'
miRNA:   3'- cuaCGCGGGGACGaa---CGCg-----CgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6333 0.66 0.407172
Target:  5'- --gGCGCCCgCcGCUUGUa-GUCGCGGc -3'
miRNA:   3'- cuaCGCGGG-GaCGAACGcgCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6503 0.66 0.407172
Target:  5'- uGcgGCGCUcguUCUGCUgcacGCGgGCCGUGa -3'
miRNA:   3'- -CuaCGCGG---GGACGAa---CGCgCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 8409 0.66 0.398422
Target:  5'- uGcgGCGCUcgaUCUGCUUGCGCGUgaucCGGu -3'
miRNA:   3'- -CuaCGCGG---GGACGAACGCGCGgc--GCC- -5'
23912 5' -62.2 NC_005262.1 + 58446 0.66 0.398422
Target:  5'- --gGaCGCCCCgGCagGCGUGC-GCGGc -3'
miRNA:   3'- cuaC-GCGGGGaCGaaCGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 29680 0.66 0.39582
Target:  5'- cGGUGCGCgCUcgucgaacgugaagUGCUUGaccacguuuuuCGCGCgCGCGGc -3'
miRNA:   3'- -CUACGCGgGG--------------ACGAAC-----------GCGCG-GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 56497 0.66 0.394956
Target:  5'- --aGCGCCUCUacaGCgaggagcaucugGaCGCGCCGUGGu -3'
miRNA:   3'- cuaCGCGGGGA---CGaa----------C-GCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 590 0.66 0.389793
Target:  5'- -uUGCGCCCCcaUGCaggUGUcauaGCGCUGCu- -3'
miRNA:   3'- cuACGCGGGG--ACGa--ACG----CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 46241 0.66 0.389793
Target:  5'- --cGCGCCgCCgcgGCUgccgccucgcGCGCGaCCGCGu -3'
miRNA:   3'- cuaCGCGG-GGa--CGAa---------CGCGC-GGCGCc -5'
23912 5' -62.2 NC_005262.1 + 46918 0.66 0.389793
Target:  5'- uGGUGCGgCCCg----GCGCGCgGcCGGg -3'
miRNA:   3'- -CUACGCgGGGacgaaCGCGCGgC-GCC- -5'
23912 5' -62.2 NC_005262.1 + 35499 0.66 0.389793
Target:  5'- cAUGCGCaCgC-GCUUGCGCGCauagGCGa -3'
miRNA:   3'- cUACGCG-GgGaCGAACGCGCGg---CGCc -5'
23912 5' -62.2 NC_005262.1 + 6721 0.66 0.389793
Target:  5'- uGAUGCcggGCCCgUGCUUgucgaacaucucGCGCGCCuCGu -3'
miRNA:   3'- -CUACG---CGGGgACGAA------------CGCGCGGcGCc -5'
23912 5' -62.2 NC_005262.1 + 52376 0.66 0.381287
Target:  5'- --cGCGCaCCUucgGCggcccgGCGCGgCGCGGc -3'
miRNA:   3'- cuaCGCG-GGGa--CGaa----CGCGCgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 25922 0.66 0.381287
Target:  5'- ---cCGCCCgUGCcuccggGCGCGCCGaugcaGGg -3'
miRNA:   3'- cuacGCGGGgACGaa----CGCGCGGCg----CC- -5'
23912 5' -62.2 NC_005262.1 + 58200 0.66 0.372907
Target:  5'- --cGCGUCgCCUGCggagaGCgGCGCCGCc- -3'
miRNA:   3'- cuaCGCGG-GGACGaa---CG-CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 16383 0.66 0.372907
Target:  5'- --gGCGUCgagCUUGCUuuucUGCGCGUCGCGc -3'
miRNA:   3'- cuaCGCGG---GGACGA----ACGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 7747 0.66 0.372907
Target:  5'- uGAUGUccuGCCCCUuCUgcgGCGgGCCcuuGCGGu -3'
miRNA:   3'- -CUACG---CGGGGAcGAa--CGCgCGG---CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.