miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23915 3' -60 NC_005262.1 + 13532 0.66 0.546326
Target:  5'- cGGC-GCGGGCGCGCCcucguugcggcGGUCgAuCUCGGc -3'
miRNA:   3'- -CUGuUGCCUGCGCGG-----------CCGGgU-GAGCU- -5'
23915 3' -60 NC_005262.1 + 49791 0.66 0.546326
Target:  5'- cGCGcCGGACGCcccugcaccGuCCGGCCCGaUCGGc -3'
miRNA:   3'- cUGUuGCCUGCG---------C-GGCCGGGUgAGCU- -5'
23915 3' -60 NC_005262.1 + 41187 0.66 0.546326
Target:  5'- cGAUcGCGuGCGCGcCCGGCgaCCGCUuCGAg -3'
miRNA:   3'- -CUGuUGCcUGCGC-GGCCG--GGUGA-GCU- -5'
23915 3' -60 NC_005262.1 + 46635 0.66 0.53611
Target:  5'- cGCGcGCGGcCuuGCCGGCCUuCUCGAu -3'
miRNA:   3'- cUGU-UGCCuGcgCGGCCGGGuGAGCU- -5'
23915 3' -60 NC_005262.1 + 52150 0.66 0.53611
Target:  5'- uGCAGC--GCGaCGCCGGCgCCGC-CGAg -3'
miRNA:   3'- cUGUUGccUGC-GCGGCCG-GGUGaGCU- -5'
23915 3' -60 NC_005262.1 + 23451 0.66 0.53611
Target:  5'- cGACGACuGGCGCauGCgCGGCCUGgaCGAa -3'
miRNA:   3'- -CUGUUGcCUGCG--CG-GCCGGGUgaGCU- -5'
23915 3' -60 NC_005262.1 + 59931 0.66 0.53611
Target:  5'- cGACGAgGGAC-UGUCGGCCUACcaucagCGGc -3'
miRNA:   3'- -CUGUUgCCUGcGCGGCCGGGUGa-----GCU- -5'
23915 3' -60 NC_005262.1 + 27966 0.66 0.535092
Target:  5'- cGCGGCGccGACGCcgcuCCGGCCCAUgaugcuguucgcgUCGAu -3'
miRNA:   3'- cUGUUGC--CUGCGc---GGCCGGGUG-------------AGCU- -5'
23915 3' -60 NC_005262.1 + 49708 0.66 0.525961
Target:  5'- cGCGACGG-CGUGCCGGgCgGCgaacCGGc -3'
miRNA:   3'- cUGUUGCCuGCGCGGCCgGgUGa---GCU- -5'
23915 3' -60 NC_005262.1 + 49913 0.66 0.52495
Target:  5'- cGACGACGGGCaGCaguaccgccugacGaCCGGCCCGgauggcgugacgUUCGAg -3'
miRNA:   3'- -CUGUUGCCUG-CG-------------C-GGCCGGGU------------GAGCU- -5'
23915 3' -60 NC_005262.1 + 49981 0.66 0.519907
Target:  5'- aGACAGCGGcgcccgcucccgccgAugaagcCGCGCCGgcGCCCAC-CGAa -3'
miRNA:   3'- -CUGUUGCC---------------U------GCGCGGC--CGGGUGaGCU- -5'
23915 3' -60 NC_005262.1 + 20868 0.66 0.515886
Target:  5'- uACGACGcGCGCGCCGGaCgACgacgCGAc -3'
miRNA:   3'- cUGUUGCcUGCGCGGCCgGgUGa---GCU- -5'
23915 3' -60 NC_005262.1 + 34005 0.66 0.515886
Target:  5'- gGGC-GCGGACGgcgugaCGCCGGgCCGCaUCGu -3'
miRNA:   3'- -CUGuUGCCUGC------GCGGCCgGGUG-AGCu -5'
23915 3' -60 NC_005262.1 + 47760 0.66 0.515886
Target:  5'- cGGCGAaccCGGcauCGCGCgGGCUCcccguGCUCGAu -3'
miRNA:   3'- -CUGUU---GCCu--GCGCGgCCGGG-----UGAGCU- -5'
23915 3' -60 NC_005262.1 + 43204 0.66 0.505889
Target:  5'- aACAGCccugcGGCGCGCCGcGCgCUGCUCGc -3'
miRNA:   3'- cUGUUGc----CUGCGCGGC-CG-GGUGAGCu -5'
23915 3' -60 NC_005262.1 + 62316 0.66 0.505889
Target:  5'- uGCAGCGG-CaGCGCCGGCagACgagCGGg -3'
miRNA:   3'- cUGUUGCCuG-CGCGGCCGggUGa--GCU- -5'
23915 3' -60 NC_005262.1 + 55059 0.66 0.495976
Target:  5'- cGCGACGGGCauggaggaGCGCCGGCUgGgcCUCu- -3'
miRNA:   3'- cUGUUGCCUG--------CGCGGCCGGgU--GAGcu -5'
23915 3' -60 NC_005262.1 + 59942 0.66 0.495976
Target:  5'- aACGACGaGGCGC-UCGcgaagcagauucGCCCGCUCGAu -3'
miRNA:   3'- cUGUUGC-CUGCGcGGC------------CGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 59046 0.66 0.495976
Target:  5'- aGugAuCcGugGCGCCGGCaggaGCUCGAg -3'
miRNA:   3'- -CugUuGcCugCGCGGCCGgg--UGAGCU- -5'
23915 3' -60 NC_005262.1 + 29901 0.66 0.495976
Target:  5'- -cCGAuCGGGC-CGCCGGCCgACgcaCGAu -3'
miRNA:   3'- cuGUU-GCCUGcGCGGCCGGgUGa--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.