miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23928 5' -54.6 NC_005262.1 + 47584 0.66 0.809503
Target:  5'- -aGCGAAGCgGCugGCUUUCAgCGA-CCg -3'
miRNA:   3'- ucCGCUUCGgUG--UGGAAGUgGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 13843 0.66 0.809503
Target:  5'- cGGCGAucggcucgaacGUCACGCCaUCcggGCCGGUCg -3'
miRNA:   3'- uCCGCUu----------CGGUGUGGaAG---UGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 41346 0.66 0.809503
Target:  5'- gGGGUGAGugccauGUCACGCCUcCACgGGguugCCg -3'
miRNA:   3'- -UCCGCUU------CGGUGUGGAaGUGgCUa---GG- -5'
23928 5' -54.6 NC_005262.1 + 39512 0.66 0.800031
Target:  5'- cGGCGAGcGUCGCGCCgauugCugCGAa-- -3'
miRNA:   3'- uCCGCUU-CGGUGUGGaa---GugGCUagg -5'
23928 5' -54.6 NC_005262.1 + 55277 0.66 0.800031
Target:  5'- cGGCGuucGGCCGCAUCggCAU--GUCCg -3'
miRNA:   3'- uCCGCu--UCGGUGUGGaaGUGgcUAGG- -5'
23928 5' -54.6 NC_005262.1 + 2713 0.66 0.799074
Target:  5'- cAGGUuaucGGGCUGCGCCUUCGUCGAcggcguaUCCg -3'
miRNA:   3'- -UCCGc---UUCGGUGUGGAAGUGGCU-------AGG- -5'
23928 5' -54.6 NC_005262.1 + 52467 0.66 0.790386
Target:  5'- cGGCGucuugcggaggaGGGCCGauuUCUUCACCG-UCCc -3'
miRNA:   3'- uCCGC------------UUCGGUgu-GGAAGUGGCuAGG- -5'
23928 5' -54.6 NC_005262.1 + 5906 0.66 0.790386
Target:  5'- cGGGCGGGa--GCGCCUUC-UCGAUCUc -3'
miRNA:   3'- -UCCGCUUcggUGUGGAAGuGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 7363 0.66 0.790386
Target:  5'- uAGGCGucGCCACgACggUCggGCCG-UCCu -3'
miRNA:   3'- -UCCGCuuCGGUG-UGgaAG--UGGCuAGG- -5'
23928 5' -54.6 NC_005262.1 + 9440 0.66 0.78746
Target:  5'- gGGuGCGAAGCCcgcauugugcgGCACCaUCcugcacgguaugguGCCGAUuCCg -3'
miRNA:   3'- -UC-CGCUUCGG-----------UGUGGaAG--------------UGGCUA-GG- -5'
23928 5' -54.6 NC_005262.1 + 30459 0.66 0.780578
Target:  5'- -cGCGAAGCCggagaacgccaACAUCgacggCGCCGAaaUCCu -3'
miRNA:   3'- ucCGCUUCGG-----------UGUGGaa---GUGGCU--AGG- -5'
23928 5' -54.6 NC_005262.1 + 41665 0.66 0.780578
Target:  5'- cGGCGgcGCCGuCAUCgcCGCCGGcaCCg -3'
miRNA:   3'- uCCGCuuCGGU-GUGGaaGUGGCUa-GG- -5'
23928 5' -54.6 NC_005262.1 + 51387 0.66 0.780578
Target:  5'- cGGCcaAGGCCGCGCCUgaccgugugCACCGcgUg -3'
miRNA:   3'- uCCGc-UUCGGUGUGGAa--------GUGGCuaGg -5'
23928 5' -54.6 NC_005262.1 + 40995 0.66 0.780578
Target:  5'- cGGCGgcGCuCGCugCUgauggCACCgcGAUCUc -3'
miRNA:   3'- uCCGCuuCG-GUGugGAa----GUGG--CUAGG- -5'
23928 5' -54.6 NC_005262.1 + 26767 0.66 0.780578
Target:  5'- uGGGCaaaGAacAGCCAUgaACCgcCGCCGAugUCCg -3'
miRNA:   3'- -UCCG---CU--UCGGUG--UGGaaGUGGCU--AGG- -5'
23928 5' -54.6 NC_005262.1 + 218 0.66 0.770619
Target:  5'- cGGCGGAGCCagACACgCUacCGCCGGc-- -3'
miRNA:   3'- uCCGCUUCGG--UGUG-GAa-GUGGCUagg -5'
23928 5' -54.6 NC_005262.1 + 49274 0.66 0.770619
Target:  5'- cGGCacuGCCAUGCUgUUGCCGAUCg -3'
miRNA:   3'- uCCGcuuCGGUGUGGaAGUGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 17687 0.66 0.770619
Target:  5'- cGGCGAagaAGCCG-GCCguggUCGCUGGcCCg -3'
miRNA:   3'- uCCGCU---UCGGUgUGGa---AGUGGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 50005 0.66 0.770619
Target:  5'- --aUGAAGCCGCGCCggcgccCACCGAa-- -3'
miRNA:   3'- uccGCUUCGGUGUGGaa----GUGGCUagg -5'
23928 5' -54.6 NC_005262.1 + 17482 0.66 0.769615
Target:  5'- cAGGaCGAAGCgCGCGCCgcgCGCgacgcguCGAUCg -3'
miRNA:   3'- -UCC-GCUUCG-GUGUGGaa-GUG-------GCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.