miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23935 3' -53 NC_005262.1 + 58593 0.66 0.886115
Target:  5'- aUGGAAuggGCugauGGGGcgccucgauGCGCUGCACCg -3'
miRNA:   3'- cGCCUUucaCGu---CCUU---------UGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 19837 0.66 0.886115
Target:  5'- cCGGguAGUcGCaaAGGAAGucuccgacCGCCGCACa -3'
miRNA:   3'- cGCCuuUCA-CG--UCCUUU--------GCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 15044 0.66 0.885372
Target:  5'- uUGGggGGUcgcccgaguucgaGCAGGcaugguCGCUGUACCc -3'
miRNA:   3'- cGCCuuUCA-------------CGUCCuuu---GCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 24187 0.66 0.88388
Target:  5'- cCGGcGAGUucacgcccgaggcgGCAGccgcGACGCUGCGCCg -3'
miRNA:   3'- cGCCuUUCA--------------CGUCcu--UUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 20378 0.66 0.878573
Target:  5'- uCGGAuAGacGUu--GAGCGCCGCGCCg -3'
miRNA:   3'- cGCCUuUCa-CGuccUUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 34123 0.66 0.878573
Target:  5'- cGCGGGuuGgGCGGGcuGCGCgGgCGCg -3'
miRNA:   3'- -CGCCUuuCaCGUCCuuUGCGgC-GUGg -5'
23935 3' -53 NC_005262.1 + 52195 0.66 0.878573
Target:  5'- aGCGGGAucGUGU-GGAAGuCGCUcgaGCGCUg -3'
miRNA:   3'- -CGCCUUu-CACGuCCUUU-GCGG---CGUGG- -5'
23935 3' -53 NC_005262.1 + 48370 0.66 0.878573
Target:  5'- gGCGGccggcuaucAGU-CGGGuuACGaCCGCGCCu -3'
miRNA:   3'- -CGCCuu-------UCAcGUCCuuUGC-GGCGUGG- -5'
23935 3' -53 NC_005262.1 + 35371 0.66 0.878573
Target:  5'- gGCGGAAAuaUGCuGGcgcACGCgGCGCUc -3'
miRNA:   3'- -CGCCUUUc-ACGuCCuu-UGCGgCGUGG- -5'
23935 3' -53 NC_005262.1 + 27751 0.66 0.878573
Target:  5'- aGCuGAAGGaGCGuGGAcaGGCGCCG-ACCg -3'
miRNA:   3'- -CGcCUUUCaCGU-CCU--UUGCGGCgUGG- -5'
23935 3' -53 NC_005262.1 + 17303 0.66 0.878573
Target:  5'- cGCGGucgGAGUGCucaugucgacGGGcuGCGUCGUgGCCg -3'
miRNA:   3'- -CGCCu--UUCACG----------UCCuuUGCGGCG-UGG- -5'
23935 3' -53 NC_005262.1 + 43188 0.66 0.873925
Target:  5'- gGCGGAuuGgcuacgcaacagcccUGCGGc--GCGCCGCGCg -3'
miRNA:   3'- -CGCCUuuC---------------ACGUCcuuUGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 28616 0.66 0.870777
Target:  5'- cGCGGca--UGCAGGAcGACGUgaacaaGCGCCu -3'
miRNA:   3'- -CGCCuuucACGUCCU-UUGCGg-----CGUGG- -5'
23935 3' -53 NC_005262.1 + 10421 0.66 0.870777
Target:  5'- cGCGGuc--UGCGGcAGGCGCaugGCGCCg -3'
miRNA:   3'- -CGCCuuucACGUCcUUUGCGg--CGUGG- -5'
23935 3' -53 NC_005262.1 + 62339 0.66 0.870777
Target:  5'- aGCGGGcggcguuuGAG-GCuauucGAAACGCUGCGCUc -3'
miRNA:   3'- -CGCCU--------UUCaCGuc---CUUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 46066 0.66 0.870777
Target:  5'- cCGGAcuguauGAcGUGCuccgcauauuGGGAGGacgGCCGCGCCg -3'
miRNA:   3'- cGCCU------UU-CACG----------UCCUUUg--CGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 9096 0.66 0.870777
Target:  5'- gGCcGAAAG-GCucGGGAACGCUGaACCg -3'
miRNA:   3'- -CGcCUUUCaCGu-CCUUUGCGGCgUGG- -5'
23935 3' -53 NC_005262.1 + 36863 0.66 0.862732
Target:  5'- cGCGGAuAGgcgGCGaauccggcucGGGAuCGUCGCGCg -3'
miRNA:   3'- -CGCCUuUCa--CGU----------CCUUuGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 24915 0.66 0.861914
Target:  5'- cCGGAggacgccGAGgcaugGCGGGAugcgcacAUGCCGCGCg -3'
miRNA:   3'- cGCCU-------UUCa----CGUCCUu------UGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 14553 0.66 0.854446
Target:  5'- cGCuGGAucG-GCAGGcgucuCGCCGCGgCg -3'
miRNA:   3'- -CG-CCUuuCaCGUCCuuu--GCGGCGUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.