miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23937 3' -53.9 NC_005262.1 + 39405 0.66 0.868263
Target:  5'- ---------cGcGGACGUGCgCGCCGCCg -3'
miRNA:   3'- ggcaacuaaaC-CUUGCGCG-GCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 2370 0.66 0.868263
Target:  5'- ----cGAcgUGGAAuuccuCG-GCCGCCGCCu -3'
miRNA:   3'- ggcaaCUaaACCUU-----GCgCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 32844 0.66 0.868263
Target:  5'- cCCGccUGcg--GGAaguaGCGCGCCGUCauGCCg -3'
miRNA:   3'- -GGCa-ACuaaaCCU----UGCGCGGCGG--CGG- -5'
23937 3' -53.9 NC_005262.1 + 43523 0.66 0.867474
Target:  5'- aCCGUUagcaagcucaaccGGAUGUGCCGCCuGCCg -3'
miRNA:   3'- -GGCAAcuaaac-------CUUGCGCGGCGG-CGG- -5'
23937 3' -53.9 NC_005262.1 + 13814 0.66 0.860275
Target:  5'- aUCGgcg----GGAGCggGCGCCGCUGUCu -3'
miRNA:   3'- -GGCaacuaaaCCUUG--CGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 12904 0.66 0.859464
Target:  5'- gCGUucaggUGAUUgacGAGCGCGCCGUgcgauugCGUCg -3'
miRNA:   3'- gGCA-----ACUAAac-CUUGCGCGGCG-------GCGG- -5'
23937 3' -53.9 NC_005262.1 + 50304 0.66 0.852057
Target:  5'- gCCGcgcgGAUUgaGGAGCcggccgcaGCGcCCGCCGCg -3'
miRNA:   3'- -GGCaa--CUAAa-CCUUG--------CGC-GGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 7842 0.66 0.852057
Target:  5'- uCCGgcgUGAccaUGaucuGACG-GCCGCCGCCc -3'
miRNA:   3'- -GGCa--ACUaa-ACc---UUGCgCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 49215 0.66 0.852057
Target:  5'- uUGUUGGgugcGGuGCGCGUgagCGCCGCg -3'
miRNA:   3'- gGCAACUaaa-CCuUGCGCG---GCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 53055 0.66 0.849547
Target:  5'- aCCGUUcaaacauucggugaGAUUUugcGGGA-GCGCCGgCCGCg -3'
miRNA:   3'- -GGCAA--------------CUAAA---CCUUgCGCGGC-GGCGg -5'
23937 3' -53.9 NC_005262.1 + 19885 0.66 0.843614
Target:  5'- gCCGcgg--UUGGcgcCGCGCUGaCCGCCu -3'
miRNA:   3'- -GGCaacuaAACCuu-GCGCGGC-GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 46233 0.66 0.843614
Target:  5'- ---------cGGcuucGCGCGCCGCCGCg -3'
miRNA:   3'- ggcaacuaaaCCu---UGCGCGGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 20581 0.66 0.843614
Target:  5'- cCCGgcGAgc---AGCGCGCgGCgCGCCg -3'
miRNA:   3'- -GGCaaCUaaaccUUGCGCGgCG-GCGG- -5'
23937 3' -53.9 NC_005262.1 + 39629 0.66 0.843614
Target:  5'- gCCGggGAacgugcaGGcgUGCGCCuccuGCCGCCc -3'
miRNA:   3'- -GGCaaCUaaa----CCuuGCGCGG----CGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 6565 0.66 0.834957
Target:  5'- aCC--UGAUUggcGGcGCGCGUCgcgauGCCGCCg -3'
miRNA:   3'- -GGcaACUAAa--CCuUGCGCGG-----CGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 37648 0.66 0.834957
Target:  5'- cUCGacGcgUUGGAGCacccagauugccGUGCCGUCGCUg -3'
miRNA:   3'- -GGCaaCuaAACCUUG------------CGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 54839 0.66 0.826092
Target:  5'- uCCG--GAUgggUGGAGUGCGUCGcCCGCg -3'
miRNA:   3'- -GGCaaCUAa--ACCUUGCGCGGC-GGCGg -5'
23937 3' -53.9 NC_005262.1 + 59137 0.66 0.826092
Target:  5'- aCCGgcc----GGGcCGCGUCGCCGCg -3'
miRNA:   3'- -GGCaacuaaaCCUuGCGCGGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 47731 0.66 0.826092
Target:  5'- gCCGccUGuAUcUGG--UGCGCCGCCgGCCg -3'
miRNA:   3'- -GGCa-AC-UAaACCuuGCGCGGCGG-CGG- -5'
23937 3' -53.9 NC_005262.1 + 12362 0.66 0.826092
Target:  5'- aCGUcgUGAc--GGuaucgcccuCGCGCgCGCCGCCg -3'
miRNA:   3'- gGCA--ACUaaaCCuu-------GCGCG-GCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.