miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23940 5' -58.9 NC_005262.1 + 43211 0.66 0.560336
Target:  5'- cUGCGGCgcGCCGCGCGCugcucgccGGGCuGcUCGu -3'
miRNA:   3'- cACGCCG--UGGUGUGCGu-------UCCGcC-AGU- -5'
23940 5' -58.9 NC_005262.1 + 60956 0.66 0.560336
Target:  5'- cGUGCGGgcaCGCCAgCGCGCAAacgaGGUCGa -3'
miRNA:   3'- -CACGCC---GUGGU-GUGCGUUccg-CCAGU- -5'
23940 5' -58.9 NC_005262.1 + 55256 0.66 0.560336
Target:  5'- aUGCGGuCAUCAuCACGCAcucGGCGuUCGg -3'
miRNA:   3'- cACGCC-GUGGU-GUGCGUu--CCGCcAGU- -5'
23940 5' -58.9 NC_005262.1 + 44988 0.66 0.560336
Target:  5'- cGUGCaGCAguCCGCGCGgcAGGCGG-CGg -3'
miRNA:   3'- -CACGcCGU--GGUGUGCguUCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 11648 0.66 0.560336
Target:  5'- -gGCGGCGCCggcgucgcgcuGCACGCu-GGcCGG-CAg -3'
miRNA:   3'- caCGCCGUGG-----------UGUGCGuuCC-GCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 14842 0.66 0.559281
Target:  5'- cUGCGGCGUCauGCugGCGaccaucuGGGCGGUa- -3'
miRNA:   3'- cACGCCGUGG--UGugCGU-------UCCGCCAgu -5'
23940 5' -58.9 NC_005262.1 + 57549 0.66 0.549814
Target:  5'- -gGCGGCaaagACCGUGCGCGcGGCGGgcuUCAg -3'
miRNA:   3'- caCGCCG----UGGUGUGCGUuCCGCC---AGU- -5'
23940 5' -58.9 NC_005262.1 + 19346 0.66 0.549814
Target:  5'- -aGCGGCACCACucuCGCAGcauGCcgagcgacacgaGGUCGc -3'
miRNA:   3'- caCGCCGUGGUGu--GCGUUc--CG------------CCAGU- -5'
23940 5' -58.9 NC_005262.1 + 54852 0.66 0.549814
Target:  5'- aGUGCGuCGCC-CGCGCGAG--GGUCAa -3'
miRNA:   3'- -CACGCcGUGGuGUGCGUUCcgCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 47634 0.66 0.549814
Target:  5'- -cGCGGCuGCCGgaggacaagaaGCGCGAGGCGaUCGa -3'
miRNA:   3'- caCGCCG-UGGUg----------UGCGUUCCGCcAGU- -5'
23940 5' -58.9 NC_005262.1 + 16007 0.66 0.549814
Target:  5'- -cGCGGCACCgACGacgaGCA-GGCGaUCGu -3'
miRNA:   3'- caCGCCGUGG-UGUg---CGUuCCGCcAGU- -5'
23940 5' -58.9 NC_005262.1 + 41866 0.66 0.539354
Target:  5'- cGUGUGGUGCCGCAcCGUAuaaugcgauauGGuGCGGcCAa -3'
miRNA:   3'- -CACGCCGUGGUGU-GCGU-----------UC-CGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 8408 0.66 0.539354
Target:  5'- aUGCGGCGCUcgaucugcuuGCGCGUGAucCGGUCGc -3'
miRNA:   3'- cACGCCGUGG----------UGUGCGUUccGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 15695 0.66 0.536229
Target:  5'- -cGCGGCGCguCACaucaucgcgcgucgGCGCcGGGCGGcUCGu -3'
miRNA:   3'- caCGCCGUG--GUG--------------UGCGuUCCGCC-AGU- -5'
23940 5' -58.9 NC_005262.1 + 34132 0.66 0.528962
Target:  5'- -gGCgGGCugCGCGgGCGcGGGCGG-CAu -3'
miRNA:   3'- caCG-CCGugGUGUgCGU-UCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 57665 0.66 0.528962
Target:  5'- -gGCGGCACgaucgacuucuCGCGCGCcGGGCGcGgCAa -3'
miRNA:   3'- caCGCCGUG-----------GUGUGCGuUCCGC-CaGU- -5'
23940 5' -58.9 NC_005262.1 + 38557 0.66 0.528962
Target:  5'- -aGcCGGCGuuGCGCGCGguucGGGCGGa-- -3'
miRNA:   3'- caC-GCCGUggUGUGCGU----UCCGCCagu -5'
23940 5' -58.9 NC_005262.1 + 53242 0.66 0.528962
Target:  5'- cUGCGGCugCGCGCGgccGGuCGcGUCGg -3'
miRNA:   3'- cACGCCGugGUGUGCguuCC-GC-CAGU- -5'
23940 5' -58.9 NC_005262.1 + 17210 0.66 0.528962
Target:  5'- cUGCGGCGaggacggCGCugGCGucGUGGUCGu -3'
miRNA:   3'- cACGCCGUg------GUGugCGUucCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 5076 0.66 0.527927
Target:  5'- -gGCGGCGgCGCGUGCGAccggcucGGCGGUg- -3'
miRNA:   3'- caCGCCGUgGUGUGCGUU-------CCGCCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.