miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 3' -54.4 NC_005262.1 + 52412 0.66 0.824774
Target:  5'- --gCGUGG--AGC-CGCGCGCGAacgUCGu -3'
miRNA:   3'- gaaGCACCagUCGuGCGCGUGCU---AGC- -5'
23943 3' -54.4 NC_005262.1 + 22667 0.66 0.824774
Target:  5'- --aCGUGucGUCcgAGCgcgccgugACGCGCACGAUCu -3'
miRNA:   3'- gaaGCAC--CAG--UCG--------UGCGCGUGCUAGc -5'
23943 3' -54.4 NC_005262.1 + 4109 0.66 0.824774
Target:  5'- --gCGUGG-CGGCACGC---CGAUCGu -3'
miRNA:   3'- gaaGCACCaGUCGUGCGcguGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 20090 0.66 0.815637
Target:  5'- -cUUGUcGGUgAGCGCGUcgccGCGCGAauUCGg -3'
miRNA:   3'- gaAGCA-CCAgUCGUGCG----CGUGCU--AGC- -5'
23943 3' -54.4 NC_005262.1 + 13005 0.66 0.815637
Target:  5'- --aCGUGGgu-GUACGCGCAgGAgcgCGc -3'
miRNA:   3'- gaaGCACCaguCGUGCGCGUgCUa--GC- -5'
23943 3' -54.4 NC_005262.1 + 14540 0.66 0.815637
Target:  5'- ---aGUGccguGCAUGCGCugGAUCGg -3'
miRNA:   3'- gaagCACcaguCGUGCGCGugCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 19791 0.66 0.815637
Target:  5'- --gCGUGGUCGucGCACauCGgGCGGUCGc -3'
miRNA:   3'- gaaGCACCAGU--CGUGc-GCgUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 3820 0.66 0.815637
Target:  5'- -aUCG-GGU--GCAUGCGCGCcuGAUCGa -3'
miRNA:   3'- gaAGCaCCAguCGUGCGCGUG--CUAGC- -5'
23943 3' -54.4 NC_005262.1 + 30503 0.66 0.815637
Target:  5'- gCUUCGgcgccCGGCGUGCGCGCGAUgCGg -3'
miRNA:   3'- -GAAGCacca-GUCGUGCGCGUGCUA-GC- -5'
23943 3' -54.4 NC_005262.1 + 56976 0.66 0.796807
Target:  5'- --gCGUGGUCGGCAagacCGCcuacgacaaGCGCGA-CGa -3'
miRNA:   3'- gaaGCACCAGUCGU----GCG---------CGUGCUaGC- -5'
23943 3' -54.4 NC_005262.1 + 7667 0.66 0.796807
Target:  5'- gUUCG-GGUC-GCuCG-GCGCGGUCGg -3'
miRNA:   3'- gAAGCaCCAGuCGuGCgCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 53855 0.66 0.796807
Target:  5'- uCUUCGccGUCAGCGCGCuGCGCu---- -3'
miRNA:   3'- -GAAGCacCAGUCGUGCG-CGUGcuagc -5'
23943 3' -54.4 NC_005262.1 + 29208 0.66 0.787134
Target:  5'- -cUCGUGGaucaCGGCGC-CGCACGG-CGc -3'
miRNA:   3'- gaAGCACCa---GUCGUGcGCGUGCUaGC- -5'
23943 3' -54.4 NC_005262.1 + 11918 0.67 0.777304
Target:  5'- uCUUCGUGaucgccuccaucGUCGggaacauggcGCACGCGCugGGgaUCGa -3'
miRNA:   3'- -GAAGCAC------------CAGU----------CGUGCGCGugCU--AGC- -5'
23943 3' -54.4 NC_005262.1 + 17334 0.67 0.757211
Target:  5'- -gUCGUGGcCGGCGCG-GCAU--UCGg -3'
miRNA:   3'- gaAGCACCaGUCGUGCgCGUGcuAGC- -5'
23943 3' -54.4 NC_005262.1 + 58942 0.67 0.757211
Target:  5'- gCUUCucGGUCGGCGCGCaGCA--GUCGa -3'
miRNA:   3'- -GAAGcaCCAGUCGUGCG-CGUgcUAGC- -5'
23943 3' -54.4 NC_005262.1 + 41157 0.67 0.754151
Target:  5'- --cCGUG--CAGCGCGCGCaggagggcaccgccGCGAUCGc -3'
miRNA:   3'- gaaGCACcaGUCGUGCGCG--------------UGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 183 0.67 0.74594
Target:  5'- -gUCGUacagcagcgugccGGUgacgauccgCAGCGCGCGCACGAg-- -3'
miRNA:   3'- gaAGCA-------------CCA---------GUCGUGCGCGUGCUagc -5'
23943 3' -54.4 NC_005262.1 + 59238 0.67 0.74594
Target:  5'- -cUCGaGGagcugcugcacgcUCAGCACGCGCAgGAgCGa -3'
miRNA:   3'- gaAGCaCC-------------AGUCGUGCGCGUgCUaGC- -5'
23943 3' -54.4 NC_005262.1 + 41910 0.67 0.740771
Target:  5'- uCUUCGUgucguccggcugcgcGGUCGGCuucaGCGC-CGAUCc -3'
miRNA:   3'- -GAAGCA---------------CCAGUCGug--CGCGuGCUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.