miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 5' -60 NC_005262.1 + 63531 0.66 0.521941
Target:  5'- -gCGGcacucAGCGCGUguaCGuCCGCGCGAAa -3'
miRNA:   3'- caGCCac---UCGCGCA---GC-GGCGCGCUUa -5'
23943 5' -60 NC_005262.1 + 35828 0.66 0.521941
Target:  5'- -aUGGgccgGAGCgGCGUCGgCGcCGCGAc- -3'
miRNA:   3'- caGCCa---CUCG-CGCAGCgGC-GCGCUua -5'
23943 5' -60 NC_005262.1 + 42955 0.66 0.521941
Target:  5'- cGUCGuGUaGAGCGgGU-GCCGCGCc--- -3'
miRNA:   3'- -CAGC-CA-CUCGCgCAgCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 42426 0.66 0.521941
Target:  5'- --gGGUGAucuucGUGCGcUCGCUGCGCGc-- -3'
miRNA:   3'- cagCCACU-----CGCGC-AGCGGCGCGCuua -5'
23943 5' -60 NC_005262.1 + 51698 0.66 0.511806
Target:  5'- -aCuGUGAGCGCGuUCGUgCGCgGCGAGa -3'
miRNA:   3'- caGcCACUCGCGC-AGCG-GCG-CGCUUa -5'
23943 5' -60 NC_005262.1 + 16999 0.66 0.501754
Target:  5'- -cCGGccGAGCGCGcgcUCGUCGUGCuGAAg -3'
miRNA:   3'- caGCCa-CUCGCGC---AGCGGCGCG-CUUa -5'
23943 5' -60 NC_005262.1 + 53114 0.66 0.499753
Target:  5'- cGUCGGcGAcuucacgaaaacCGCGaUGCCGCGCGAGUu -3'
miRNA:   3'- -CAGCCaCUc-----------GCGCaGCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 54938 0.66 0.491789
Target:  5'- -----cGGGCGUGUCGCUGCGCu--- -3'
miRNA:   3'- cagccaCUCGCGCAGCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 42041 0.66 0.491789
Target:  5'- -aCGuUGAcGCGUGcCGCUGCGCGAu- -3'
miRNA:   3'- caGCcACU-CGCGCaGCGGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 46912 0.66 0.491789
Target:  5'- -gCGGUGuGGUGCGgccCGgCGCGCGGc- -3'
miRNA:   3'- caGCCAC-UCGCGCa--GCgGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 17253 0.66 0.481916
Target:  5'- -gCGG-GAGCgGCGgccggCGCCGCGCu--- -3'
miRNA:   3'- caGCCaCUCG-CGCa----GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 20441 0.66 0.47214
Target:  5'- uGUCGuUGuGCGCcuUCGCCGCGuCGAu- -3'
miRNA:   3'- -CAGCcACuCGCGc-AGCGGCGC-GCUua -5'
23943 5' -60 NC_005262.1 + 20445 0.66 0.47214
Target:  5'- -aCGGUuccGGCacCGUCGCCGCGUGGGc -3'
miRNA:   3'- caGCCAc--UCGc-GCAGCGGCGCGCUUa -5'
23943 5' -60 NC_005262.1 + 1182 0.66 0.47214
Target:  5'- -gCGGaagcccAGUGCGaguUCGCCGCGCGAu- -3'
miRNA:   3'- caGCCac----UCGCGC---AGCGGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 13790 0.66 0.471168
Target:  5'- uUCGGUGGGCGCcggCGCgGCuucaucgGCGGGa -3'
miRNA:   3'- cAGCCACUCGCGca-GCGgCG-------CGCUUa -5'
23943 5' -60 NC_005262.1 + 49153 0.67 0.462465
Target:  5'- -aCGGUGGGCGUGcaggccgcaUCgGCCGCaGCGGc- -3'
miRNA:   3'- caGCCACUCGCGC---------AG-CGGCG-CGCUua -5'
23943 5' -60 NC_005262.1 + 56892 0.67 0.452896
Target:  5'- --aGGUcGAGCGCGacaacacgcUCGCCG-GCGAGa -3'
miRNA:   3'- cagCCA-CUCGCGC---------AGCGGCgCGCUUa -5'
23943 5' -60 NC_005262.1 + 2462 0.67 0.452896
Target:  5'- -aCGGUGGacguugagcauGCGCGUggUGCCGCGCu--- -3'
miRNA:   3'- caGCCACU-----------CGCGCA--GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 43309 0.67 0.452896
Target:  5'- -aUGGUGcGCGCGauuacgcacUCGCCGCucuGCGGAa -3'
miRNA:   3'- caGCCACuCGCGC---------AGCGGCG---CGCUUa -5'
23943 5' -60 NC_005262.1 + 40881 0.67 0.443436
Target:  5'- cGUCGGcGAGCGCGUagcaGUCuucCGCGAu- -3'
miRNA:   3'- -CAGCCaCUCGCGCAg---CGGc--GCGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.