miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23944 3' -54.8 NC_005262.1 + 35759 0.66 0.812479
Target:  5'- gGAUguuGCG-CCAgcucucggCGCCCGCGUa- -3'
miRNA:   3'- gCUAauuCGCuGGUa-------GCGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 23192 0.66 0.812479
Target:  5'- uGAUUAugcuGCGGCaucugCGCCaccgucaGCGCGAc -3'
miRNA:   3'- gCUAAUu---CGCUGgua--GCGGg------CGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 19370 0.66 0.812479
Target:  5'- ----cGAGCGACacgagGUCGCCaucgugugcggCGCGCGGg -3'
miRNA:   3'- gcuaaUUCGCUGg----UAGCGG-----------GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 30749 0.66 0.806884
Target:  5'- aGAUgucGGCcGCCGaucgugaugccuaccUCGCCuCGCGCGGc -3'
miRNA:   3'- gCUAau-UCGcUGGU---------------AGCGG-GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 8758 0.66 0.803118
Target:  5'- ------cGCGAUCAUCgugaacgucuuGCCCGCGCcGAc -3'
miRNA:   3'- gcuaauuCGCUGGUAG-----------CGGGCGCG-CU- -5'
23944 3' -54.8 NC_005262.1 + 47391 0.66 0.803118
Target:  5'- aCGA--GGGCGACC-UCGa--GCGCGAc -3'
miRNA:   3'- -GCUaaUUCGCUGGuAGCgggCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 8275 0.66 0.803118
Target:  5'- cCGAggAAGCuGCCcgcGUCGCUCGCgagGCGGc -3'
miRNA:   3'- -GCUaaUUCGcUGG---UAGCGGGCG---CGCU- -5'
23944 3' -54.8 NC_005262.1 + 7180 0.66 0.803118
Target:  5'- uCGAgucguAGCuGCCcuucGUCGCCCacGCGCGGa -3'
miRNA:   3'- -GCUaau--UCGcUGG----UAGCGGG--CGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 29179 0.66 0.793583
Target:  5'- ----cAGGCGGCCGUCGCCgaGC-UGAu -3'
miRNA:   3'- gcuaaUUCGCUGGUAGCGGg-CGcGCU- -5'
23944 3' -54.8 NC_005262.1 + 15335 0.66 0.793583
Target:  5'- ------cGCGGCUcgCGaUCCGCGCGGc -3'
miRNA:   3'- gcuaauuCGCUGGuaGC-GGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 41186 0.66 0.793583
Target:  5'- gCGAUc--GCGugCG-CGCCCG-GCGAc -3'
miRNA:   3'- -GCUAauuCGCugGUaGCGGGCgCGCU- -5'
23944 3' -54.8 NC_005262.1 + 42622 0.66 0.79069
Target:  5'- -cAUgcGGCGAUCGUCGCUcgcuuugucacguuCGCGUGAc -3'
miRNA:   3'- gcUAauUCGCUGGUAGCGG--------------GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 53257 0.66 0.783884
Target:  5'- --------aGACCAUCGaCCGCGUGAa -3'
miRNA:   3'- gcuaauucgCUGGUAGCgGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 50428 0.66 0.783884
Target:  5'- gCGAgggccGCGugCAcgucgUCGUgCCGCGCGAg -3'
miRNA:   3'- -GCUaauu-CGCugGU-----AGCG-GGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 9938 0.66 0.783884
Target:  5'- cCGGcUUGAGCGcgaucugcuuGCCGUcCGCgCCGCGCc- -3'
miRNA:   3'- -GCU-AAUUCGC----------UGGUA-GCG-GGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 47130 0.66 0.774031
Target:  5'- cCGGcu--GCGGCCAcuugaacuugUCGUCCGCGUGc -3'
miRNA:   3'- -GCUaauuCGCUGGU----------AGCGGGCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 26554 0.66 0.774031
Target:  5'- ----gAAGCGGCCGaCGCgCUGCGCc- -3'
miRNA:   3'- gcuaaUUCGCUGGUaGCG-GGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 49217 0.66 0.774031
Target:  5'- cCGA--GGGCGGCC-UCGgCgGCGCGc -3'
miRNA:   3'- -GCUaaUUCGCUGGuAGCgGgCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 20094 0.66 0.764035
Target:  5'- uCGG-UGAGCG--CGUCG-CCGCGCGAa -3'
miRNA:   3'- -GCUaAUUCGCugGUAGCgGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 18296 0.66 0.764035
Target:  5'- uCGggUAGGCGcGCCGguUCGCUuCGCgGCGAa -3'
miRNA:   3'- -GCuaAUUCGC-UGGU--AGCGG-GCG-CGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.