miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23945 5' -50.4 NC_005262.1 + 47074 0.66 0.963404
Target:  5'- cGGCGuGACGCc-CGuGUCcaAGGAGGUCGUg -3'
miRNA:   3'- -CCGC-UUGCGacGC-CAG--UCUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 11394 0.66 0.963404
Target:  5'- cGCGAucgccuccaGCGUcuCGGcCAGAAGGUUGCu -3'
miRNA:   3'- cCGCU---------UGCGacGCCaGUCUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 1842 0.66 0.963404
Target:  5'- aGGCu-GCGCaUGCGGUUgccugcuuGGUCGCg -3'
miRNA:   3'- -CCGcuUGCG-ACGCCAGucuu----UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 14016 0.66 0.963404
Target:  5'- gGGCGuccgGCGCggcaGCGGcCGGAGccucgggCGCg -3'
miRNA:   3'- -CCGCu---UGCGa---CGCCaGUCUUuua----GCG- -5'
23945 5' -50.4 NC_005262.1 + 44850 0.66 0.959594
Target:  5'- aGGCGAAUGC-GUGGgccCGcGAGGAcCGCc -3'
miRNA:   3'- -CCGCUUGCGaCGCCa--GU-CUUUUaGCG- -5'
23945 5' -50.4 NC_005262.1 + 35551 0.66 0.959594
Target:  5'- cGCGAuguCGCUcGcCGGcgCGGGAAAgagCGCg -3'
miRNA:   3'- cCGCUu--GCGA-C-GCCa-GUCUUUUa--GCG- -5'
23945 5' -50.4 NC_005262.1 + 2793 0.66 0.959594
Target:  5'- cGGCGAGCGgcuugaUGaCGGUCGGcacggccgacAGGAaCGCa -3'
miRNA:   3'- -CCGCUUGCg-----AC-GCCAGUC----------UUUUaGCG- -5'
23945 5' -50.4 NC_005262.1 + 10736 0.66 0.959594
Target:  5'- cGCGAuCGC-GcCGGUCAGcgcGUCGUa -3'
miRNA:   3'- cCGCUuGCGaC-GCCAGUCuuuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 10465 0.66 0.959198
Target:  5'- cGGCGAgguagcgGCGCgcGCGGUCGc----UCGCc -3'
miRNA:   3'- -CCGCU-------UGCGa-CGCCAGUcuuuuAGCG- -5'
23945 5' -50.4 NC_005262.1 + 45158 0.66 0.955519
Target:  5'- aGGCGcucGCGCUGCGuG-CGGA----CGCg -3'
miRNA:   3'- -CCGCu--UGCGACGC-CaGUCUuuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 4876 0.66 0.955519
Target:  5'- aGCGcGCGCcauCGGUCGGGccgccggccuGAUCGCg -3'
miRNA:   3'- cCGCuUGCGac-GCCAGUCUu---------UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 13989 0.66 0.955519
Target:  5'- gGGCGAACGCUGguuguguguaUGGacccCAGcgugcAGUCGCu -3'
miRNA:   3'- -CCGCUUGCGAC----------GCCa---GUCuu---UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 32643 0.66 0.954245
Target:  5'- uGGCGAuuGCGCggGCGaUCAGGucugcgaacgcuucGAGuUCGCg -3'
miRNA:   3'- -CCGCU--UGCGa-CGCcAGUCU--------------UUU-AGCG- -5'
23945 5' -50.4 NC_005262.1 + 8961 0.66 0.951175
Target:  5'- cGGC--GCGCUGCGuGUCGGuccAAUC-Ca -3'
miRNA:   3'- -CCGcuUGCGACGC-CAGUCuu-UUAGcG- -5'
23945 5' -50.4 NC_005262.1 + 13508 0.66 0.951175
Target:  5'- aGGCGAAgGCgGCGGcaugagauaCGGAAGcgUGUg -3'
miRNA:   3'- -CCGCUUgCGaCGCCa--------GUCUUUuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 19235 0.66 0.951175
Target:  5'- gGGCGuguacucCGCguucagGCGGUC-GAuguAGUCGCc -3'
miRNA:   3'- -CCGCuu-----GCGa-----CGCCAGuCUu--UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 4329 0.66 0.951175
Target:  5'- cGGCGAGC-CUcGCGGgccguccaUCGGcc-GUCGCg -3'
miRNA:   3'- -CCGCUUGcGA-CGCC--------AGUCuuuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 40575 0.66 0.946078
Target:  5'- cGGCGGugccgcgaccgucGCGCUGaCGGUggcgCAGAugc-CGCa -3'
miRNA:   3'- -CCGCU-------------UGCGAC-GCCA----GUCUuuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 50609 0.67 0.941657
Target:  5'- cGCGAGCGCUuCGG-CuGAAccuGUUGCu -3'
miRNA:   3'- cCGCUUGCGAcGCCaGuCUUu--UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 8289 0.67 0.941657
Target:  5'- cGCGucgcuCGCgagGCGGcCaagaaggugaAGAAGAUCGCa -3'
miRNA:   3'- cCGCuu---GCGa--CGCCaG----------UCUUUUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.