miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 3' -53.2 NC_005262.1 + 37845 0.65 0.899334
Target:  5'- gCCacAUACGUUCcucguUGCCGGAaaagucggcgucgcGCGugGCGa -3'
miRNA:   3'- -GGc-UGUGCAAG-----ACGGUCU--------------UGCugCGC- -5'
23950 3' -53.2 NC_005262.1 + 19650 0.66 0.894492
Target:  5'- cCCGAuCGCGcgCgcguccgGCCGGAACG-CGgGa -3'
miRNA:   3'- -GGCU-GUGCaaGa------CGGUCUUGCuGCgC- -5'
23950 3' -53.2 NC_005262.1 + 14247 0.66 0.894492
Target:  5'- uCUG-CGCGacCUGCUGGAGCG-CGCu -3'
miRNA:   3'- -GGCuGUGCaaGACGGUCUUGCuGCGc -5'
23950 3' -53.2 NC_005262.1 + 16735 0.66 0.894492
Target:  5'- aCCGggcaGCACGggUCUGCgAuGugGGCGCa -3'
miRNA:   3'- -GGC----UGUGCa-AGACGgUcUugCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 48767 0.66 0.894492
Target:  5'- gUCGGCGCGaacauggCaGCgCAGGACGuGCGCGa -3'
miRNA:   3'- -GGCUGUGCaa-----GaCG-GUCUUGC-UGCGC- -5'
23950 3' -53.2 NC_005262.1 + 7675 0.66 0.894492
Target:  5'- gCGGCACGccaaagaUCUGUgAGAGCuGCGCc -3'
miRNA:   3'- gGCUGUGCa------AGACGgUCUUGcUGCGc -5'
23950 3' -53.2 NC_005262.1 + 23663 0.66 0.894492
Target:  5'- gCGugAaucCGUggaUGCCGcccGAGCGGCGCGu -3'
miRNA:   3'- gGCugU---GCAag-ACGGU---CUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 58073 0.66 0.894492
Target:  5'- -gGGUugGUgUUGCCGGAAaCGACGCu -3'
miRNA:   3'- ggCUGugCAaGACGGUCUU-GCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 5188 0.66 0.887356
Target:  5'- gCgGGCGCGggCgcgGCCGGcGCGAC-CGa -3'
miRNA:   3'- -GgCUGUGCaaGa--CGGUCuUGCUGcGC- -5'
23950 3' -53.2 NC_005262.1 + 10174 0.66 0.887356
Target:  5'- gCCGAUccugaagucCGUUacCUGCCgAGcGGCGACGCGg -3'
miRNA:   3'- -GGCUGu--------GCAA--GACGG-UC-UUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 2981 0.66 0.887356
Target:  5'- gCCGGCGCaaacUCUGCgacagCGGAACG-CGCa -3'
miRNA:   3'- -GGCUGUGca--AGACG-----GUCUUGCuGCGc -5'
23950 3' -53.2 NC_005262.1 + 5111 0.66 0.887356
Target:  5'- cCCGGuuCACGaugcCUGCCAugcgcgacGGGCGGCGCu -3'
miRNA:   3'- -GGCU--GUGCaa--GACGGU--------CUUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 27367 0.66 0.887356
Target:  5'- aCGAcCACGUUUccgUGCCAuccAGCGAUGCc -3'
miRNA:   3'- gGCU-GUGCAAG---ACGGUc--UUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 6598 0.66 0.887356
Target:  5'- aCCGGCAgGUccgggUCgaGCgGGAGCGACacgaGCGg -3'
miRNA:   3'- -GGCUGUgCA-----AGa-CGgUCUUGCUG----CGC- -5'
23950 3' -53.2 NC_005262.1 + 16038 0.66 0.886628
Target:  5'- cCCG-CGCGa--UGCCGGGuucgccgcggccgGCGGCGCa -3'
miRNA:   3'- -GGCuGUGCaagACGGUCU-------------UGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 60112 0.66 0.879966
Target:  5'- gCCGGCAucacCGUcgUCacgGCCAGcGACGGcCGCGa -3'
miRNA:   3'- -GGCUGU----GCA--AGa--CGGUC-UUGCU-GCGC- -5'
23950 3' -53.2 NC_005262.1 + 45124 0.66 0.879966
Target:  5'- gCCGcgaACAcCGcgC-GCCAGAACGuGCGCGa -3'
miRNA:   3'- -GGC---UGU-GCaaGaCGGUCUUGC-UGCGC- -5'
23950 3' -53.2 NC_005262.1 + 28382 0.66 0.872327
Target:  5'- aCGaACACG-UCgccggGCUGGAGCGuGCGCGc -3'
miRNA:   3'- gGC-UGUGCaAGa----CGGUCUUGC-UGCGC- -5'
23950 3' -53.2 NC_005262.1 + 10445 0.66 0.872327
Target:  5'- gCCGAuCAgGUUCgcgcgGUCGGcgagguAGCGGCGCGc -3'
miRNA:   3'- -GGCU-GUgCAAGa----CGGUC------UUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 4562 0.66 0.872327
Target:  5'- gCGGCGCa-UCUcgcGCCAGcGGCGGCGCu -3'
miRNA:   3'- gGCUGUGcaAGA---CGGUC-UUGCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.