miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 5' -62.5 NC_005262.1 + 40164 0.66 0.429175
Target:  5'- gGGUGCGGCGUuuccugcacuuuccgCUGGggacuggugccCUGGAACGCugguGCg -3'
miRNA:   3'- -CCGCGCCGCA---------------GGCC-----------GACCUUGCG----CGa -5'
23950 5' -62.5 NC_005262.1 + 51534 0.66 0.425584
Target:  5'- uGCGCaacacGGCGaCCGGCucgcguaccacgUGGucGCGCGCg -3'
miRNA:   3'- cCGCG-----CCGCaGGCCG------------ACCu-UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 27972 0.66 0.425584
Target:  5'- aGGC-CGGCauuggCUGGCUGGAAU-CGCa -3'
miRNA:   3'- -CCGcGCCGca---GGCCGACCUUGcGCGa -5'
23950 5' -62.5 NC_005262.1 + 40539 0.66 0.425584
Target:  5'- cGuCGCGGCGggCGGCUcuuACGCGCc -3'
miRNA:   3'- cC-GCGCCGCagGCCGAccuUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 4659 0.66 0.425584
Target:  5'- cGCGCGGCGacgcggcCCGGCcGGuucgccucGGCGCGgUa -3'
miRNA:   3'- cCGCGCCGCa------GGCCGaCC--------UUGCGCgA- -5'
23950 5' -62.5 NC_005262.1 + 38969 0.66 0.425584
Target:  5'- cGGCaCGGCG-CCGGCcGcGAucgcgagcuCGCGCUu -3'
miRNA:   3'- -CCGcGCCGCaGGCCGaC-CUu--------GCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 20746 0.66 0.425584
Target:  5'- cGCGCGGUG-CCGGCcGGGuCGaUGUa -3'
miRNA:   3'- cCGCGCCGCaGGCCGaCCUuGC-GCGa -5'
23950 5' -62.5 NC_005262.1 + 58563 0.66 0.42469
Target:  5'- aGCGCGGCGUCgacgccaCGGCgau--CGUGCa -3'
miRNA:   3'- cCGCGCCGCAG-------GCCGaccuuGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 13727 0.66 0.416687
Target:  5'- cGGCGCaGCGgccuucgucUCCGGCUucgucucgGGAGCagccgGCGCc -3'
miRNA:   3'- -CCGCGcCGC---------AGGCCGA--------CCUUG-----CGCGa -5'
23950 5' -62.5 NC_005262.1 + 52585 0.66 0.416687
Target:  5'- cGGCGCGGCucucgaUCUuGCaGGuGGCGCGCa -3'
miRNA:   3'- -CCGCGCCGc-----AGGcCGaCC-UUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 58634 0.66 0.416687
Target:  5'- aGGCuCGGCaGUCgagCGGCcGG-GCGCGCg -3'
miRNA:   3'- -CCGcGCCG-CAG---GCCGaCCuUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 13689 0.66 0.416687
Target:  5'- cGCGCGGUG-CUGGCgcgugaGGucgaagugccuGACGUGCUg -3'
miRNA:   3'- cCGCGCCGCaGGCCGa-----CC-----------UUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 29229 0.66 0.407904
Target:  5'- cGGCGCGcacacgaCGUucggaucgucgCCGaGCUGGAACGUGUc -3'
miRNA:   3'- -CCGCGCc------GCA-----------GGC-CGACCUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 54815 0.66 0.407032
Target:  5'- cGCGCGGCGUUuagccgaUGGauuUGGAccgacacgcaGCGCGCc -3'
miRNA:   3'- cCGCGCCGCAG-------GCCg--ACCU----------UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 40670 0.66 0.399238
Target:  5'- cGGUGCGGCGaaCGGgUGGAACa---- -3'
miRNA:   3'- -CCGCGCCGCagGCCgACCUUGcgcga -5'
23950 5' -62.5 NC_005262.1 + 35080 0.66 0.399238
Target:  5'- cGCGCGGCcUCgCGGC-GGAACuCGUc -3'
miRNA:   3'- cCGCGCCGcAG-GCCGaCCUUGcGCGa -5'
23950 5' -62.5 NC_005262.1 + 62610 0.66 0.394095
Target:  5'- cGCGCGGCGaacucgcacugggcuUCCGcGCaGGAugGCa-- -3'
miRNA:   3'- cCGCGCCGC---------------AGGC-CGaCCUugCGcga -5'
23950 5' -62.5 NC_005262.1 + 47754 0.66 0.39069
Target:  5'- cGGcCGCGGCGaacCCGGCau---CGCGCg -3'
miRNA:   3'- -CC-GCGCCGCa--GGCCGaccuuGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 59124 0.66 0.39069
Target:  5'- cGCGCcgaGGCGaaCCGGCcGGGccgcgucgccGCGCGCa -3'
miRNA:   3'- cCGCG---CCGCa-GGCCGaCCU----------UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 11087 0.66 0.39069
Target:  5'- aGCGCGGCcucGUCCGGCgucGGccGGCG-GCc -3'
miRNA:   3'- cCGCGCCG---CAGGCCGa--CC--UUGCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.