miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 5' -60 NC_005262.1 + 6372 0.66 0.552911
Target:  5'- cGGUGCCgGAGCGUugucGgCCGcCUucUCGGCg -3'
miRNA:   3'- cCUACGG-CUCGCA----CgGGCaGA--GGCCG- -5'
23953 5' -60 NC_005262.1 + 12793 0.66 0.552911
Target:  5'- cGGUcGCCGgucgcuuccuuGGCcUGCUCGaccuUCUCCGGCg -3'
miRNA:   3'- cCUA-CGGC-----------UCGcACGGGC----AGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 59696 0.66 0.552911
Target:  5'- cGGcGUGCCGccacGCGggcGCUaCGUCgCCGGCa -3'
miRNA:   3'- -CC-UACGGCu---CGCa--CGG-GCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 55634 0.66 0.542718
Target:  5'- aGAaGCCGGGCcgcgcgcucGUGgCCGcgUCCGGCa -3'
miRNA:   3'- cCUaCGGCUCG---------CACgGGCagAGGCCG- -5'
23953 5' -60 NC_005262.1 + 10400 0.66 0.542718
Target:  5'- -cGUGCCG-GCGuUGUCCuugaacgcgGUCUgCGGCa -3'
miRNA:   3'- ccUACGGCuCGC-ACGGG---------CAGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 52207 0.66 0.532587
Target:  5'- uGGAagucGCuCGAGCGcUGgCCGcCgCCGGCa -3'
miRNA:   3'- -CCUa---CG-GCUCGC-ACgGGCaGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 4878 0.66 0.532587
Target:  5'- --uUGCCGAGCGccgacucGaCCUG-CUUCGGCg -3'
miRNA:   3'- ccuACGGCUCGCa------C-GGGCaGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 48091 0.66 0.522525
Target:  5'- ---cGUCGAGCGcauagcgcUGCUCGUCcgUCuCGGCg -3'
miRNA:   3'- ccuaCGGCUCGC--------ACGGGCAG--AG-GCCG- -5'
23953 5' -60 NC_005262.1 + 49176 0.66 0.522525
Target:  5'- ---gGCCGcAGCG-GCgCGcacggcgaugaUCUCCGGCa -3'
miRNA:   3'- ccuaCGGC-UCGCaCGgGC-----------AGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 45224 0.66 0.522525
Target:  5'- ---cGCCGGGCucgGCCUGaacgCCGGCa -3'
miRNA:   3'- ccuaCGGCUCGca-CGGGCaga-GGCCG- -5'
23953 5' -60 NC_005262.1 + 22115 0.66 0.512537
Target:  5'- aGAUGCCGA---UGCCgGUg-CCGGCg -3'
miRNA:   3'- cCUACGGCUcgcACGGgCAgaGGCCG- -5'
23953 5' -60 NC_005262.1 + 60833 0.66 0.511542
Target:  5'- cGAUGCCGGGCagcgugaGUGCCCGcC-CCa-- -3'
miRNA:   3'- cCUACGGCUCG-------CACGGGCaGaGGccg -5'
23953 5' -60 NC_005262.1 + 17781 0.67 0.492804
Target:  5'- cGAgGCCGAGCGcaaagccaGCCUcaaUCCGGCa -3'
miRNA:   3'- cCUaCGGCUCGCa-------CGGGcagAGGCCG- -5'
23953 5' -60 NC_005262.1 + 33885 0.67 0.487926
Target:  5'- ---cGCCGAGCGUGgucgcaucgcccgaaCCGUCaucuuccugaagcgCCGGCg -3'
miRNA:   3'- ccuaCGGCUCGCACg--------------GGCAGa-------------GGCCG- -5'
23953 5' -60 NC_005262.1 + 5685 0.67 0.486952
Target:  5'- gGGAgaggGCCgGAGCGgaggcaggugcgcuuUGCguagcgUCGUUUCCGGCa -3'
miRNA:   3'- -CCUa---CGG-CUCGC---------------ACG------GGCAGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 32874 0.67 0.46769
Target:  5'- ---cGCCGAGCuGUucGCCgCGUCgaacgucggccaagCCGGCg -3'
miRNA:   3'- ccuaCGGCUCG-CA--CGG-GCAGa-------------GGCCG- -5'
23953 5' -60 NC_005262.1 + 28637 0.67 0.463885
Target:  5'- --uUGCCGccAGCGUcGCCCGga-UCGGCg -3'
miRNA:   3'- ccuACGGC--UCGCA-CGGGCagaGGCCG- -5'
23953 5' -60 NC_005262.1 + 35685 0.67 0.454443
Target:  5'- ---cGUCGAGCGgGCacggaagcauCCG-CUCCGGCg -3'
miRNA:   3'- ccuaCGGCUCGCaCG----------GGCaGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 25903 0.68 0.442326
Target:  5'- cGAUGCCGAGCagcgcgcaugguacGUcGCCaCGcgcgacgccgacUUUCCGGCa -3'
miRNA:   3'- cCUACGGCUCG--------------CA-CGG-GC------------AGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 46849 0.68 0.435878
Target:  5'- ---cGCCGAGCGUGCUgGacuUCUUCcGCa -3'
miRNA:   3'- ccuaCGGCUCGCACGGgC---AGAGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.