miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 60767 0.66 0.460499
Target:  5'- gGCgCCGGCUCaa-CGgCUU-CCGCCGGa -3'
miRNA:   3'- -CG-GGCCGAGcucGUgGAAcGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 32896 0.66 0.460499
Target:  5'- uGCCaucCUCGAGCgcgagcggcgucACCauccgGCCGCCGGc -3'
miRNA:   3'- -CGGgccGAGCUCG------------UGGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2516 0.66 0.459563
Target:  5'- aGgCUGGCcgcgccgaUCGAGUcugucacgaacugGCCcagGCCGCCGGu -3'
miRNA:   3'- -CgGGCCG--------AGCUCG-------------UGGaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 59694 0.66 0.451183
Target:  5'- -aUCGGCgugccgccacgCGGGCGCUacGUCGCCGGc -3'
miRNA:   3'- cgGGCCGa----------GCUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 11461 0.66 0.451183
Target:  5'- aUCCGGCgauacgCGuccGGCGCCUUGUU-CCGGa -3'
miRNA:   3'- cGGGCCGa-----GC---UCGUGGAACGGcGGCC- -5'
23956 5' -61.9 NC_005262.1 + 19117 0.66 0.451183
Target:  5'- cGUUCGGaUCGGGCGCgggcgcGUCGCCGGc -3'
miRNA:   3'- -CGGGCCgAGCUCGUGgaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 23250 0.66 0.451183
Target:  5'- uGCCCGGCgcguaaGAGcCGCCc-GCCGCg-- -3'
miRNA:   3'- -CGGGCCGag----CUC-GUGGaaCGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 20121 0.66 0.451183
Target:  5'- gGCCCGGCUUGGcUugCguucagGUCGCCa- -3'
miRNA:   3'- -CGGGCCGAGCUcGugGaa----CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 13471 0.66 0.451183
Target:  5'- cGUCCuGCgcggCGGGCGC--UGCgGCCGGc -3'
miRNA:   3'- -CGGGcCGa---GCUCGUGgaACGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12727 0.66 0.451183
Target:  5'- uCCUGcGCggCGAGCACCUgauggUGCcCGUCGa -3'
miRNA:   3'- cGGGC-CGa-GCUCGUGGA-----ACG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 49763 0.66 0.451183
Target:  5'- cGCCCGcGCcCGAgGCuccgGCCgcUGCCgcGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCU-CG----UGGa-ACGG--CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 13019 0.66 0.451183
Target:  5'- cUUCGGCUUGAucucgaaccGCACCUUGcCCGUCu- -3'
miRNA:   3'- cGGGCCGAGCU---------CGUGGAAC-GGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 46028 0.66 0.450257
Target:  5'- cGCUCGGCcucgaauUCGAGCAgCgUGUCGuCCGc -3'
miRNA:   3'- -CGGGCCG-------AGCUCGUgGaACGGC-GGCc -5'
23956 5' -61.9 NC_005262.1 + 23461 0.66 0.441971
Target:  5'- cGCgCCGGCcgUGAGCcgauGCUcgaagcgGUCGCCGGg -3'
miRNA:   3'- -CG-GGCCGa-GCUCG----UGGaa-----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 46395 0.66 0.441971
Target:  5'- cGCCCaGCgucUCG-GCAUUgucgGCCGCCGa -3'
miRNA:   3'- -CGGGcCG---AGCuCGUGGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 49731 0.66 0.441971
Target:  5'- -aCCGGCggcCGAagccGCACCgacGCCGgCGGc -3'
miRNA:   3'- cgGGCCGa--GCU----CGUGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 51548 0.66 0.441971
Target:  5'- -aCCGGCUCGcGUACCacgugGUCGCgcgCGGa -3'
miRNA:   3'- cgGGCCGAGCuCGUGGaa---CGGCG---GCC- -5'
23956 5' -61.9 NC_005262.1 + 41034 0.66 0.441056
Target:  5'- aGCCCGGagaGGGCGagauguuccccauCCUcGCUGCUGGc -3'
miRNA:   3'- -CGGGCCgagCUCGU-------------GGAaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 33336 0.66 0.432866
Target:  5'- uGCgUcGCUgCGcGGCACCgUGCCGCCGa -3'
miRNA:   3'- -CGgGcCGA-GC-UCGUGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 28214 0.66 0.432866
Target:  5'- aGCCCGcGC-CGAGCACaacaUUcGCgcucuuucccgCGCCGGc -3'
miRNA:   3'- -CGGGC-CGaGCUCGUGg---AA-CG-----------GCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.