miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23961 3' -61.2 NC_005262.1 + 12644 0.66 0.490329
Target:  5'- gCGCGCUCGGCgacuucuucacgGCGuCGAGcgccuuGUCGAc -3'
miRNA:   3'- gGCGCGGGCCG------------CGC-GCUCuu----CAGCUa -5'
23961 3' -61.2 NC_005262.1 + 30831 0.66 0.490329
Target:  5'- gCGCGUCuCGGCGaCGCGcaucGUCGAc -3'
miRNA:   3'- gGCGCGG-GCCGC-GCGCucuuCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 27525 0.66 0.480644
Target:  5'- cUCGUGCCCGcGCGCacCGAcGAGGgCGAg -3'
miRNA:   3'- -GGCGCGGGC-CGCGc-GCU-CUUCaGCUa -5'
23961 3' -61.2 NC_005262.1 + 35653 0.66 0.480644
Target:  5'- gCGCGCUCGGgGaagaugGCGAgcaugacgucGAGGUCGAc -3'
miRNA:   3'- gGCGCGGGCCgCg-----CGCU----------CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 46130 0.66 0.471053
Target:  5'- gCCGCuuccaGCUCGGCGCGCuGGcGGgCGAUc -3'
miRNA:   3'- -GGCG-----CGGGCCGCGCGcUCuUCaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 50280 0.66 0.468194
Target:  5'- cCCGCGCCggccgagcccgugaCGGcCGCGCggauuGAGGAGcCGGc -3'
miRNA:   3'- -GGCGCGG--------------GCC-GCGCG-----CUCUUCaGCUa -5'
23961 3' -61.2 NC_005262.1 + 17560 0.66 0.46156
Target:  5'- gCgGCaGCCgCGGCgGCGCGcGAAGcCGAg -3'
miRNA:   3'- -GgCG-CGG-GCCG-CGCGCuCUUCaGCUa -5'
23961 3' -61.2 NC_005262.1 + 22926 0.66 0.455913
Target:  5'- aCGCGCUCGccgacgccaugcucCGCGCGGGGAGgcgUGAUg -3'
miRNA:   3'- gGCGCGGGCc-------------GCGCGCUCUUCa--GCUA- -5'
23961 3' -61.2 NC_005262.1 + 31005 0.66 0.452169
Target:  5'- aCGCGauggCCGGCGCGCcgccGguGUCGAg -3'
miRNA:   3'- gGCGCg---GGCCGCGCGcu--CuuCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 4412 0.66 0.452169
Target:  5'- gCGCGCCUGcUGCGCGAGcgccugGAGcUCGGc -3'
miRNA:   3'- gGCGCGGGCcGCGCGCUC------UUC-AGCUa -5'
23961 3' -61.2 NC_005262.1 + 43552 0.66 0.452169
Target:  5'- cCUGcCGUCCGGauuccuCGCGCagacguGGGAGGUCGAg -3'
miRNA:   3'- -GGC-GCGGGCC------GCGCG------CUCUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 19308 0.66 0.442883
Target:  5'- aCGUGCUCGGCGaUGCGAguGAAGgugucUCGGa -3'
miRNA:   3'- gGCGCGGGCCGC-GCGCU--CUUC-----AGCUa -5'
23961 3' -61.2 NC_005262.1 + 31911 0.66 0.442883
Target:  5'- cCCGCguaGCCCgugaagucgGGCGUuCGAuGAAGUCGAg -3'
miRNA:   3'- -GGCG---CGGG---------CCGCGcGCU-CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 12480 0.66 0.433706
Target:  5'- gCCGCGCgCGGaUGCGCccaucuGGUCGAg -3'
miRNA:   3'- -GGCGCGgGCC-GCGCGcucu--UCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 36284 0.66 0.433706
Target:  5'- -gGCGCgCGGCGaCGCGAacaccucGGUCGAc -3'
miRNA:   3'- ggCGCGgGCCGC-GCGCUcu-----UCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 22487 0.67 0.42464
Target:  5'- -aGCGCUgaagcUGGCGCGCGAGcGGaucgCGAa -3'
miRNA:   3'- ggCGCGG-----GCCGCGCGCUCuUCa---GCUa -5'
23961 3' -61.2 NC_005262.1 + 16874 0.67 0.42464
Target:  5'- -gGCGCCCGGcCGCGCGccGGGcCGc- -3'
miRNA:   3'- ggCGCGGGCC-GCGCGCucUUCaGCua -5'
23961 3' -61.2 NC_005262.1 + 60 0.67 0.415689
Target:  5'- gCCGgggagGCCgCGGCuCGCGAaGAAGUCGGc -3'
miRNA:   3'- -GGCg----CGG-GCCGcGCGCU-CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 30498 0.67 0.415689
Target:  5'- cCUGCGUCaGGCGCaCGAGAuGGUCGu- -3'
miRNA:   3'- -GGCGCGGgCCGCGcGCUCU-UCAGCua -5'
23961 3' -61.2 NC_005262.1 + 12657 0.67 0.406854
Target:  5'- gCGCGCgCGGCGCGCGGcGAAc----- -3'
miRNA:   3'- gGCGCGgGCCGCGCGCU-CUUcagcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.