miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23962 3' -51 NC_005262.1 + 43987 0.66 0.929375
Target:  5'- cGUGAUCGcgcggGCGAUGGucgcuuaaucgugucCCGaGUggUGCg -3'
miRNA:   3'- uUACUAGCa----CGCUAUC---------------GGC-CGuuACG- -5'
23962 3' -51 NC_005262.1 + 18332 0.66 0.927035
Target:  5'- ---cAUCcuuUGUGAUGGgCGGCAGUGUg -3'
miRNA:   3'- uuacUAGc--ACGCUAUCgGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 17546 0.66 0.920978
Target:  5'- --cGGUCGcGCGcgAGgCGGCAGccGCg -3'
miRNA:   3'- uuaCUAGCaCGCuaUCgGCCGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 8224 0.66 0.914625
Target:  5'- --cGcgCGcUGCGAgccGGCCGGguCGAUGCc -3'
miRNA:   3'- uuaCuaGC-ACGCUa--UCGGCC--GUUACG- -5'
23962 3' -51 NC_005262.1 + 25740 0.66 0.914625
Target:  5'- --cGAUCGcGCa--GGCCGGCAAgccGCu -3'
miRNA:   3'- uuaCUAGCaCGcuaUCGGCCGUUa--CG- -5'
23962 3' -51 NC_005262.1 + 27071 0.66 0.914625
Target:  5'- --cGuUCGUGCGcgAGCuCGGCGAc-- -3'
miRNA:   3'- uuaCuAGCACGCuaUCG-GCCGUUacg -5'
23962 3' -51 NC_005262.1 + 53783 0.66 0.914625
Target:  5'- ---cGUCG-GCGAUA-CCGGCAaccugAUGCa -3'
miRNA:   3'- uuacUAGCaCGCUAUcGGCCGU-----UACG- -5'
23962 3' -51 NC_005262.1 + 57477 0.66 0.914625
Target:  5'- --aGGUCGaggGCGAgaAGCCGGCcgacgagGCg -3'
miRNA:   3'- uuaCUAGCa--CGCUa-UCGGCCGuua----CG- -5'
23962 3' -51 NC_005262.1 + 38962 0.66 0.914625
Target:  5'- gGGUGAUCGgcacgGCGccGGCC-GCGAUcGCg -3'
miRNA:   3'- -UUACUAGCa----CGCuaUCGGcCGUUA-CG- -5'
23962 3' -51 NC_005262.1 + 45774 0.66 0.901042
Target:  5'- --cGAUCGgcaucgcgGCGAaGGgCGGCGgcGUGCu -3'
miRNA:   3'- uuaCUAGCa-------CGCUaUCgGCCGU--UACG- -5'
23962 3' -51 NC_005262.1 + 30564 0.66 0.901042
Target:  5'- cGUGcgCGU-CGAUGuugacGUCGGCAAUGUg -3'
miRNA:   3'- uUACuaGCAcGCUAU-----CGGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 58759 0.67 0.893817
Target:  5'- --cGAUCaG-GCGccGGCCGGCGA-GCa -3'
miRNA:   3'- uuaCUAG-CaCGCuaUCGGCCGUUaCG- -5'
23962 3' -51 NC_005262.1 + 54914 0.67 0.878523
Target:  5'- ---cGUCGUGCGGUGuGCCc-CAAUGCg -3'
miRNA:   3'- uuacUAGCACGCUAU-CGGccGUUACG- -5'
23962 3' -51 NC_005262.1 + 30128 0.67 0.876134
Target:  5'- --cGAUCGUGCcgcugcuggucgccGAagcGCCGGCgGAUGCc -3'
miRNA:   3'- uuaCUAGCACG--------------CUau-CGGCCG-UUACG- -5'
23962 3' -51 NC_005262.1 + 17074 0.67 0.870465
Target:  5'- --cGGUCGUGCcgGAUugcGCCGGCuuguccacUGCg -3'
miRNA:   3'- uuaCUAGCACG--CUAu--CGGCCGuu------ACG- -5'
23962 3' -51 NC_005262.1 + 28534 0.67 0.870465
Target:  5'- cGUGGUCGUGCcGUucGCCGGgGGcGCc -3'
miRNA:   3'- uUACUAGCACGcUAu-CGGCCgUUaCG- -5'
23962 3' -51 NC_005262.1 + 43848 0.67 0.870465
Target:  5'- --cGcgCG-GCGGUGcGCCGGCAGgaccucgGCg -3'
miRNA:   3'- uuaCuaGCaCGCUAU-CGGCCGUUa------CG- -5'
23962 3' -51 NC_005262.1 + 22319 0.67 0.862143
Target:  5'- uGUGAUUGUGC----GCCGGCAucuggGCu -3'
miRNA:   3'- uUACUAGCACGcuauCGGCCGUua---CG- -5'
23962 3' -51 NC_005262.1 + 21642 0.68 0.853565
Target:  5'- --cGAUCGgccGCGAccgGGCCcGGCGccGCg -3'
miRNA:   3'- uuaCUAGCa--CGCUa--UCGG-CCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 30893 0.68 0.826379
Target:  5'- --cGcgCGUGCGAcgccGCCGGCuugGCc -3'
miRNA:   3'- uuaCuaGCACGCUau--CGGCCGuuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.