miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 3' -56.7 NC_005262.1 + 32794 0.66 0.683982
Target:  5'- ---gGCgGCgCGCCggCCAUCGCGUUc -3'
miRNA:   3'- acaaCGgCG-GCGGuaGGUGGUGCAAc -5'
23964 3' -56.7 NC_005262.1 + 59232 0.66 0.683982
Target:  5'- ---cGCCGCCGCUggcgcgagAUgCGCCGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGG--------UAgGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 4826 0.66 0.683982
Target:  5'- cGUgagGCCGCCGgCggCCGgCugGUUc -3'
miRNA:   3'- aCAa--CGGCGGCgGuaGGUgGugCAAc -5'
23964 3' -56.7 NC_005262.1 + 926 0.66 0.677533
Target:  5'- aUGgUGUCGCCcaucuucacgggcguGCCAUCCucguACCGCGUc- -3'
miRNA:   3'- -ACaACGGCGG---------------CGGUAGG----UGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 6561 0.66 0.662428
Target:  5'- gUGUUGCCGCCGaCGagCGgCGCGa-- -3'
miRNA:   3'- -ACAACGGCGGCgGUagGUgGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 11759 0.66 0.662428
Target:  5'- aUGUaGgCGCCggcgaucgucauGCCGUCCAUCACGa-- -3'
miRNA:   3'- -ACAaCgGCGG------------CGGUAGGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 3618 0.66 0.662428
Target:  5'- gGUUGCCGCCcacugGCCGagCGCCuucACGgcGg -3'
miRNA:   3'- aCAACGGCGG-----CGGUagGUGG---UGCaaC- -5'
23964 3' -56.7 NC_005262.1 + 62101 0.66 0.662428
Target:  5'- cGUcGCCGCCGCgGca-ACCGCGUc- -3'
miRNA:   3'- aCAaCGGCGGCGgUaggUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 33849 0.66 0.651604
Target:  5'- ---cGCCGCCGCCcgCguCCGgGUc- -3'
miRNA:   3'- acaaCGGCGGCGGuaGguGGUgCAac -5'
23964 3' -56.7 NC_005262.1 + 17013 0.66 0.651604
Target:  5'- ---gGCuCGCCGCCGUUgaUACCGCGc-- -3'
miRNA:   3'- acaaCG-GCGGCGGUAG--GUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 51464 0.66 0.640763
Target:  5'- --aUGCUGCCGCCG-CgCGCUGCGg-- -3'
miRNA:   3'- acaACGGCGGCGGUaG-GUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 2386 0.66 0.640763
Target:  5'- ---gGCCGCCGCC-UUCGCCucGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGGuAGGUGG--UGCaac -5'
23964 3' -56.7 NC_005262.1 + 14145 0.66 0.640763
Target:  5'- ---nGCCGCCGCCuugcaggCCGCCgaucGCGa-- -3'
miRNA:   3'- acaaCGGCGGCGGua-----GGUGG----UGCaac -5'
23964 3' -56.7 NC_005262.1 + 34012 0.67 0.629914
Target:  5'- cUGgggUGCCG-CGCCGUCCGgCACu--- -3'
miRNA:   3'- -ACa--ACGGCgGCGGUAGGUgGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 42123 0.67 0.629914
Target:  5'- cGgcGCCGCCGCuCAggUugCGCGUg- -3'
miRNA:   3'- aCaaCGGCGGCG-GUagGugGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 34202 0.67 0.619068
Target:  5'- ---aGCUGCCGCCcgCgAUCGCGg-- -3'
miRNA:   3'- acaaCGGCGGCGGuaGgUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 36018 0.67 0.619068
Target:  5'- --gUGCCGUCGCauCAUCgUGCCGCGUg- -3'
miRNA:   3'- acaACGGCGGCG--GUAG-GUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 22818 0.67 0.619068
Target:  5'- ---cGCCGCCGCCAgaaacCCGaCGcCGUUGu -3'
miRNA:   3'- acaaCGGCGGCGGUa----GGUgGU-GCAAC- -5'
23964 3' -56.7 NC_005262.1 + 28563 0.67 0.619068
Target:  5'- ---aGCCGCUGCCgAUCgCGCCGCc--- -3'
miRNA:   3'- acaaCGGCGGCGG-UAG-GUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 25858 0.67 0.615816
Target:  5'- cGUUGgCGUCGCgGUCCAugcgcgccaaucguCCACGcUGa -3'
miRNA:   3'- aCAACgGCGGCGgUAGGU--------------GGUGCaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.