miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23968 5' -59.1 NC_005262.1 + 50244 0.66 0.543175
Target:  5'- gUGUCGGCCGaGAu-CGAcCGC-CGCAAc -3'
miRNA:   3'- -ACAGCCGGC-CUucGCU-GCGcGCGUUu -5'
23968 5' -59.1 NC_005262.1 + 17547 0.66 0.543175
Target:  5'- gGUC-GCgCGcGAGGCGGCagccgcggcgGCGCGCGAAg -3'
miRNA:   3'- aCAGcCG-GC-CUUCGCUG----------CGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 37860 0.66 0.543175
Target:  5'- cGUU-GCCGGAaaagucGGCGuCGCGCGUg-- -3'
miRNA:   3'- aCAGcCGGCCU------UCGCuGCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 58079 0.66 0.543175
Target:  5'- gUGUU-GCCGGAAaCGACGCuaCGCAAAg -3'
miRNA:   3'- -ACAGcCGGCCUUcGCUGCGc-GCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 49346 0.66 0.543175
Target:  5'- aGgcgCGcGCCGcgcucgcugacGAcucGGCGACGCGCGCGu- -3'
miRNA:   3'- aCa--GC-CGGC-----------CU---UCGCUGCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 11819 0.66 0.532772
Target:  5'- aGUUGcgaaCCGGAcaguuucgAGCGcagGCGCGCGCGAGc -3'
miRNA:   3'- aCAGCc---GGCCU--------UCGC---UGCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 9234 0.66 0.532772
Target:  5'- cGUCGGCCGccagucguGAGGgGACGacacgagcaCGCGUGAGg -3'
miRNA:   3'- aCAGCCGGC--------CUUCgCUGC---------GCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 61163 0.66 0.532772
Target:  5'- cGgCGGCgGGcGAGCuGACGgGCGCGc- -3'
miRNA:   3'- aCaGCCGgCC-UUCG-CUGCgCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 52394 0.66 0.532772
Target:  5'- cGgcgCGGCgCGGcuucGGCGuggagcCGCGCGCGAAc -3'
miRNA:   3'- aCa--GCCG-GCCu---UCGCu-----GCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 17243 0.66 0.532772
Target:  5'- cGUgGGCgucgCGGGAGCGGCGgccggcgcCGCGCu-- -3'
miRNA:   3'- aCAgCCG----GCCUUCGCUGC--------GCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 22610 0.66 0.532772
Target:  5'- gGUC-GCCGGgcGCGcACGCGauCGCGGc -3'
miRNA:   3'- aCAGcCGGCCuuCGC-UGCGC--GCGUUu -5'
23968 5' -59.1 NC_005262.1 + 15158 0.66 0.522442
Target:  5'- aGUCGGCgCGGAuguuggacGGC-ACGCaGCGCu-- -3'
miRNA:   3'- aCAGCCG-GCCU--------UCGcUGCG-CGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 14264 0.66 0.522442
Target:  5'- cGcCGGagaCGGAAGUGGCaaaGCGCGAAc -3'
miRNA:   3'- aCaGCCg--GCCUUCGCUGcg-CGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 4149 0.66 0.512189
Target:  5'- uUGUCGGCgaccagCGcGAGGagaGACugGCGCGCGAGg -3'
miRNA:   3'- -ACAGCCG------GC-CUUCg--CUG--CGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 11540 0.66 0.512189
Target:  5'- -cUCGGCCGcucgccggcuGAAGUGcaucACGCGCGCu-- -3'
miRNA:   3'- acAGCCGGC----------CUUCGC----UGCGCGCGuuu -5'
23968 5' -59.1 NC_005262.1 + 43860 0.66 0.512189
Target:  5'- cGcCGGCaGGAccucGGCGcgauCGCGCGCAu- -3'
miRNA:   3'- aCaGCCGgCCU----UCGCu---GCGCGCGUuu -5'
23968 5' -59.1 NC_005262.1 + 21644 0.66 0.502021
Target:  5'- -aUCGGCCGcGAccgGGCccGGCGCcGCGUAGAc -3'
miRNA:   3'- acAGCCGGC-CU---UCG--CUGCG-CGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 8235 0.66 0.502021
Target:  5'- cUGUCGGCgaagcucGAAGcCGA-GCGCGCGAAa -3'
miRNA:   3'- -ACAGCCGgc-----CUUC-GCUgCGCGCGUUU- -5'
23968 5' -59.1 NC_005262.1 + 1725 0.66 0.501009
Target:  5'- gGUCGagaagcuacGCCgugugcaGGAGGCGAUGCGcCGCAu- -3'
miRNA:   3'- aCAGC---------CGG-------CCUUCGCUGCGC-GCGUuu -5'
23968 5' -59.1 NC_005262.1 + 23945 0.67 0.491942
Target:  5'- gGUCcagcaaGCuCGGcGAGUGugGCGCGCAGu -3'
miRNA:   3'- aCAGc-----CG-GCC-UUCGCugCGCGCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.