miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23969 5' -58.5 NC_005262.1 + 11100 0.66 0.585376
Target:  5'- -cCGgCGUCgGCCGGCGGccUUCCuGCUc -3'
miRNA:   3'- caGCgGCAG-CGGCCGUU--AAGGuCGGu -5'
23969 5' -58.5 NC_005262.1 + 57237 0.66 0.585376
Target:  5'- -gCGCCGcUCGUCGGCGGcaaCAcGCCGa -3'
miRNA:   3'- caGCGGC-AGCGGCCGUUaagGU-CGGU- -5'
23969 5' -58.5 NC_005262.1 + 26695 0.66 0.585376
Target:  5'- -gUGCCGUgGCCGGCccgaUCGGUCGa -3'
miRNA:   3'- caGCGGCAgCGGCCGuuaaGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 32918 0.66 0.585376
Target:  5'- cGUCaccauCCGgcCGCCGGCGAcUCCucGGCCGu -3'
miRNA:   3'- -CAGc----GGCa-GCGGCCGUUaAGG--UCGGU- -5'
23969 5' -58.5 NC_005262.1 + 17036 0.66 0.575812
Target:  5'- cGUCGCCGccuguacgaccggcgUGgCGGCGAUcgaUCCGGUCGu -3'
miRNA:   3'- -CAGCGGCa--------------GCgGCCGUUA---AGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 975 0.66 0.574751
Target:  5'- cGUgGCCGaUCGUCGGCAcgUC--GCCu -3'
miRNA:   3'- -CAgCGGC-AGCGGCCGUuaAGguCGGu -5'
23969 5' -58.5 NC_005262.1 + 11039 0.66 0.574751
Target:  5'- -aUGCCGuucgcgaucUCGCUGGCGcc-CCAGCCc -3'
miRNA:   3'- caGCGGC---------AGCGGCCGUuaaGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 50041 0.66 0.574751
Target:  5'- --aGCCGgCGCCGGCugcUCCcgagacgaAGCCGg -3'
miRNA:   3'- cagCGGCaGCGGCCGuuaAGG--------UCGGU- -5'
23969 5' -58.5 NC_005262.1 + 12674 0.66 0.564171
Target:  5'- -gCGCCuuGUCGaCCGGCGcgUCgAGCaCGa -3'
miRNA:   3'- caGCGG--CAGC-GGCCGUuaAGgUCG-GU- -5'
23969 5' -58.5 NC_005262.1 + 26642 0.66 0.564171
Target:  5'- aGUCGUgGUCGuaGGgAGcccaUCCGGCCAc -3'
miRNA:   3'- -CAGCGgCAGCggCCgUUa---AGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 18799 0.66 0.564171
Target:  5'- aUCGCCa-CGUgCGGCucguugUCCAGCCAc -3'
miRNA:   3'- cAGCGGcaGCG-GCCGuua---AGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 51509 0.66 0.553644
Target:  5'- cGUUGCCGagaaaGCuCGGCucg-CCGGCCGc -3'
miRNA:   3'- -CAGCGGCag---CG-GCCGuuaaGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 9257 0.66 0.553644
Target:  5'- cGUCGCUG--GCCGGaaucCAAUUCUGGCCc -3'
miRNA:   3'- -CAGCGGCagCGGCC----GUUAAGGUCGGu -5'
23969 5' -58.5 NC_005262.1 + 16537 0.66 0.553644
Target:  5'- uUCGCCuuGUCcugcgccuGCUGGCGcUUCCAuGCCAu -3'
miRNA:   3'- cAGCGG--CAG--------CGGCCGUuAAGGU-CGGU- -5'
23969 5' -58.5 NC_005262.1 + 2347 0.66 0.547355
Target:  5'- uUCGCCGUcCGCCGccuucuucgcgacguGgAAUUCCucGGCCGc -3'
miRNA:   3'- cAGCGGCA-GCGGC---------------CgUUAAGG--UCGGU- -5'
23969 5' -58.5 NC_005262.1 + 58610 0.66 0.543175
Target:  5'- -gCGCCGgccgcgcccgCGCCcGCGAcgCCGGCCGu -3'
miRNA:   3'- caGCGGCa---------GCGGcCGUUaaGGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 28177 0.66 0.543175
Target:  5'- -gUGCCGUUGCCGGaCGAcUgCAacGCCAu -3'
miRNA:   3'- caGCGGCAGCGGCC-GUUaAgGU--CGGU- -5'
23969 5' -58.5 NC_005262.1 + 46446 0.66 0.543175
Target:  5'- -gCGCCGcccgCGCCGGacccgAAUgccgcgCCGGCCAc -3'
miRNA:   3'- caGCGGCa---GCGGCCg----UUAa-----GGUCGGU- -5'
23969 5' -58.5 NC_005262.1 + 51371 0.66 0.543175
Target:  5'- -gCGCCGUccgcgaCGCCGGCcAAggCCGcGCCu -3'
miRNA:   3'- caGCGGCA------GCGGCCG-UUaaGGU-CGGu -5'
23969 5' -58.5 NC_005262.1 + 52943 0.66 0.543175
Target:  5'- -gCGCCGccugggcuUCGCCGGCGgcaagGUgcUCgAGCCGg -3'
miRNA:   3'- caGCGGC--------AGCGGCCGU-----UA--AGgUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.