miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 63366 0.68 0.317782
Target:  5'- cAGCAgCCGGCCgucaaGCAggcgGCgGCUGCCa- -3'
miRNA:   3'- -UUGUgGGCCGG-----CGUa---CGgCGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 62401 0.66 0.41748
Target:  5'- uAGCGCCCGcCCGCGgauugugguuaUGUaaCGCaACCGCg -3'
miRNA:   3'- -UUGUGGGCcGGCGU-----------ACG--GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 61572 0.68 0.333085
Target:  5'- cGACuguUCCGGCCGCGcgaagaUGUCGuCUAgCGCu -3'
miRNA:   3'- -UUGu--GGGCCGGCGU------ACGGC-GAUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 61251 0.67 0.364459
Target:  5'- cGCGCCCGucaGCuCGCccGCCGCcgcgaucUGCUGCg -3'
miRNA:   3'- uUGUGGGC---CG-GCGuaCGGCG-------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 60498 0.77 0.086546
Target:  5'- aGACGCCgGGCCGCGcGgCGCagGCCGCc -3'
miRNA:   3'- -UUGUGGgCCGGCGUaCgGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 60290 0.67 0.373669
Target:  5'- cGACcuCgCCGGCCgGCuccuUGCCGgUUGCCGCc -3'
miRNA:   3'- -UUGu-G-GGCCGG-CGu---ACGGC-GAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 60177 0.67 0.35704
Target:  5'- aGGCGCUCGGCCaGUggGCgGCaACCGg -3'
miRNA:   3'- -UUGUGGGCCGG-CGuaCGgCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 59140 0.72 0.174275
Target:  5'- --gGCCgGGCCGCGUcGCCGCg--CGCa -3'
miRNA:   3'- uugUGGgCCGGCGUA-CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 59046 0.66 0.454698
Target:  5'- cGGCGgCCGGCUGguUcGaCUGCUGCgCGCc -3'
miRNA:   3'- -UUGUgGGCCGGCguA-C-GGCGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 58970 0.68 0.340937
Target:  5'- -cCAgCCGGCCGCcgGCgGCcucacgccucCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaCGgCGau--------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 58868 0.73 0.156879
Target:  5'- -uCACgCCGGCgcagcccgCGCGUugGCUGCUGCCGCg -3'
miRNA:   3'- uuGUG-GGCCG--------GCGUA--CGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58794 0.66 0.425693
Target:  5'- cAGCGCCuCGG--GCAUGCCGCcagcuugUugCGCg -3'
miRNA:   3'- -UUGUGG-GCCggCGUACGGCG-------AugGCG- -5'
23978 3' -60.9 NC_005262.1 + 58724 0.74 0.141068
Target:  5'- cGCGCCCGGCCGCucgacUGCCGa-GCCu- -3'
miRNA:   3'- uUGUGGGCCGGCGu----ACGGCgaUGGcg -5'
23978 3' -60.9 NC_005262.1 + 58702 0.7 0.2555
Target:  5'- cAACAagCUGGCgGCAUGCCcgagGCgcugACCGCg -3'
miRNA:   3'- -UUGUg-GGCCGgCGUACGG----CGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58526 0.68 0.340937
Target:  5'- -cCGCCCuGCC-CGUGCUGCUGCaCGa -3'
miRNA:   3'- uuGUGGGcCGGcGUACGGCGAUG-GCg -5'
23978 3' -60.9 NC_005262.1 + 57761 0.72 0.19337
Target:  5'- cGCGCCCGGCgCGCgagaagucgaucGUGCCGCcgAUCGa -3'
miRNA:   3'- uUGUGGGCCG-GCG------------UACGGCGa-UGGCg -5'
23978 3' -60.9 NC_005262.1 + 57433 0.68 0.31033
Target:  5'- cAACGCuCCGGCaccgucCGCGgaUGCCGCgGCgGCg -3'
miRNA:   3'- -UUGUG-GGCCG------GCGU--ACGGCGaUGgCG- -5'
23978 3' -60.9 NC_005262.1 + 57172 0.69 0.28186
Target:  5'- cGGCgACCCcucGCCGCucGUGUCGCUcCCGCu -3'
miRNA:   3'- -UUG-UGGGc--CGGCG--UACGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 55637 0.72 0.188431
Target:  5'- --aGCCgGGCCGCGcGCuCGUgGCCGCg -3'
miRNA:   3'- uugUGGgCCGGCGUaCG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 55161 0.66 0.41748
Target:  5'- -cUACCCGGCCGCGaacaucaugGUCGCggACgaGCa -3'
miRNA:   3'- uuGUGGGCCGGCGUa--------CGGCGa-UGg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.