miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 47812 0.66 0.464281
Target:  5'- cGCACCagauacaGGCgGCGaGCCGCcGCCcgGCg -3'
miRNA:   3'- uUGUGGg------CCGgCGUaCGGCGaUGG--CG- -5'
23978 3' -60.9 NC_005262.1 + 53768 0.66 0.41116
Target:  5'- cGCGCCCGGCUGauagAUGCCcucgggcagguugGCgaucgccuuggcgaaUGCCGCg -3'
miRNA:   3'- uUGUGGGCCGGCg---UACGG-------------CG---------------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51364 0.67 0.400464
Target:  5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3'
miRNA:   3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35717 0.82 0.035356
Target:  5'- -uCGCCC-GCCGCGUGCCGUUGCCGg -3'
miRNA:   3'- uuGUGGGcCGGCGUACGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 55008 0.66 0.454698
Target:  5'- cACGCCCGGCaGCGUcaggugcgaGCCGUcgaacUGgCGCg -3'
miRNA:   3'- uUGUGGGCCGgCGUA---------CGGCG-----AUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 43170 0.66 0.454698
Target:  5'- --uGCCCGGUCagGUcgaugAUGaaGCUGCCGCg -3'
miRNA:   3'- uugUGGGCCGG--CG-----UACggCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 26215 0.66 0.43586
Target:  5'- aGAUugCCGuGCCGUc-GCUGUUGCCGa -3'
miRNA:   3'- -UUGugGGC-CGGCGuaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 35086 0.66 0.43586
Target:  5'- gGACggGCCCGcGCUGC-UGCCcgGCUGCCu- -3'
miRNA:   3'- -UUG--UGGGC-CGGCGuACGG--CGAUGGcg -5'
23978 3' -60.9 NC_005262.1 + 35492 0.66 0.426611
Target:  5'- -uCGCCgGGCUggaGCGUGCgCGCgguauugagcGCCGCg -3'
miRNA:   3'- uuGUGGgCCGG---CGUACG-GCGa---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2066 0.66 0.41748
Target:  5'- cACACCaCuGCCaacacgGCAUGCCGCaucUGCCGg -3'
miRNA:   3'- uUGUGG-GcCGG------CGUACGGCG---AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 58794 0.66 0.425693
Target:  5'- cAGCGCCuCGG--GCAUGCCGCcagcuugUugCGCg -3'
miRNA:   3'- -UUGUGG-GCCggCGUACGGCG-------AugGCG- -5'
23978 3' -60.9 NC_005262.1 + 49790 0.66 0.427531
Target:  5'- -cCGCCCGGCaCGCcgucgcgguucagguUGCgCGC-GCCGCc -3'
miRNA:   3'- uuGUGGGCCG-GCGu--------------ACG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 30896 0.66 0.461395
Target:  5'- cGCACCgGGUuugcgauguaggucUGCAUGUCGgCUccuuaGCCGCg -3'
miRNA:   3'- uUGUGGgCCG--------------GCGUACGGC-GA-----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48430 0.66 0.424775
Target:  5'- cAGCGCCgGGUCGguCGUGCCGagcuucuucugGCCGUa -3'
miRNA:   3'- -UUGUGGgCCGGC--GUACGGCga---------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 22328 0.66 0.454698
Target:  5'- uGCGCaggCCGGCCgGCGUggGCgGCgcgGCCGUg -3'
miRNA:   3'- uUGUG---GGCCGG-CGUA--CGgCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2678 0.66 0.43586
Target:  5'- cGACACCCgcaugaagGGCCGCcgGCuCGUcuCCGa -3'
miRNA:   3'- -UUGUGGG--------CCGGCGuaCG-GCGauGGCg -5'
23978 3' -60.9 NC_005262.1 + 2824 0.66 0.41748
Target:  5'- cGCAUCCGGgaccucgaggCGCAggGCgagCGCUACCGCa -3'
miRNA:   3'- uUGUGGGCCg---------GCGUa-CG---GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 5397 0.66 0.408469
Target:  5'- -cCugCCGGCCaGCuccGaCCGCcucgACCGCg -3'
miRNA:   3'- uuGugGGCCGG-CGua-C-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 59046 0.66 0.454698
Target:  5'- cGGCGgCCGGCUGguUcGaCUGCUGCgCGCc -3'
miRNA:   3'- -UUGUgGGCCGGCguA-C-GGCGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 11060 0.66 0.445223
Target:  5'- cGGCGuuCCCGGCgCGCcgaacagcgcgaAUGCCuGCUGCgCGUa -3'
miRNA:   3'- -UUGU--GGGCCG-GCG------------UACGG-CGAUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.