miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 63277 0.68 0.209455
Target:  5'- cGCCGCcUGCuuGaCGGCCGGCuGCUggCUCg -3'
miRNA:   3'- -CGGCGcGCGugC-GCCGGCCG-CGA--GGG- -5'
23982 5' -66.1 NC_005262.1 + 62977 0.71 0.130389
Target:  5'- cGUCgGCGCGCugGCGGgugaUGGUGUcgCCCa -3'
miRNA:   3'- -CGG-CGCGCGugCGCCg---GCCGCGa-GGG- -5'
23982 5' -66.1 NC_005262.1 + 62899 0.71 0.117696
Target:  5'- cGCCaGCGCGC-CGaCGaGCUGGCGCgcaaUCUCa -3'
miRNA:   3'- -CGG-CGCGCGuGC-GC-CGGCCGCG----AGGG- -5'
23982 5' -66.1 NC_005262.1 + 62812 0.67 0.229016
Target:  5'- cGCCaGCGCGCcgaucagggugcguGCGCGauuacccaucGUC-GCGCUCCCc -3'
miRNA:   3'- -CGG-CGCGCG--------------UGCGC----------CGGcCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 62736 0.7 0.1372
Target:  5'- uCgGCGCGCugGCGGUCaGCGC-CgCa -3'
miRNA:   3'- cGgCGCGCGugCGCCGGcCGCGaGgG- -5'
23982 5' -66.1 NC_005262.1 + 62294 0.67 0.2597
Target:  5'- aGCCGCGgGC--GCGGCUuGGUGUUUgCCa -3'
miRNA:   3'- -CGGCGCgCGugCGCCGG-CCGCGAG-GG- -5'
23982 5' -66.1 NC_005262.1 + 62030 0.68 0.213042
Target:  5'- cGCCGCGCGCgauccuccuccucgAUGCGGCgCaucGC-CUCCUg -3'
miRNA:   3'- -CGGCGCGCG--------------UGCGCCG-Gc--CGcGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 61877 0.73 0.088495
Target:  5'- cGCCGCgcaggcgaaaacGCGCugGuCGGUCGGCGCgugCUa -3'
miRNA:   3'- -CGGCG------------CGCGugC-GCCGGCCGCGa--GGg -5'
23982 5' -66.1 NC_005262.1 + 61799 0.7 0.14803
Target:  5'- aGCagaGCGCGCcgaGCGaacCCGGCGCgCCCu -3'
miRNA:   3'- -CGg--CGCGCGug-CGCc--GGCCGCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 61789 0.69 0.172051
Target:  5'- aCCaGCGCGUuuucgccuGCGCGGCgcaugccuCGGCGCUCg- -3'
miRNA:   3'- cGG-CGCGCG--------UGCGCCG--------GCCGCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 60943 0.68 0.196585
Target:  5'- cGCCGCGCauugccucggccaucGcCACGCcgaucgcguaGGCCGGCGCaaaCUCu -3'
miRNA:   3'- -CGGCGCG---------------C-GUGCG----------CCGGCCGCGa--GGG- -5'
23982 5' -66.1 NC_005262.1 + 60862 0.66 0.301125
Target:  5'- gGCCGaggcaauGCGCGCGaaagcgcgaugaaguCGGCCGuGCGCaCCg -3'
miRNA:   3'- -CGGCg------CGCGUGC---------------GCCGGC-CGCGaGGg -5'
23982 5' -66.1 NC_005262.1 + 60713 0.69 0.176378
Target:  5'- cGCCGCuCGCcaGCGUGcGCaUGGCGUUCgCCg -3'
miRNA:   3'- -CGGCGcGCG--UGCGC-CG-GCCGCGAG-GG- -5'
23982 5' -66.1 NC_005262.1 + 60625 0.67 0.2252
Target:  5'- cGCCaUGCGCACGCuGGCgagCGGCGagcaCCg -3'
miRNA:   3'- -CGGcGCGCGUGCG-CCG---GCCGCgag-GG- -5'
23982 5' -66.1 NC_005262.1 + 60586 0.78 0.03785
Target:  5'- gGCCuGCGC-CGCGCGGcCCGGCGUcucgCCCu -3'
miRNA:   3'- -CGG-CGCGcGUGCGCC-GGCCGCGa---GGG- -5'
23982 5' -66.1 NC_005262.1 + 60549 0.72 0.106161
Target:  5'- aCCGCaaGgGCACGCugacGCCGGCGCUCg- -3'
miRNA:   3'- cGGCG--CgCGUGCGc---CGGCCGCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 60476 0.68 0.214595
Target:  5'- uGCCGC-CGaCGaucuUGCGGCCGGCGaccuUCgCCg -3'
miRNA:   3'- -CGGCGcGC-GU----GCGCCGGCCGCg---AG-GG- -5'
23982 5' -66.1 NC_005262.1 + 60413 0.67 0.2252
Target:  5'- aGCCGCGCGCGC-CGua-GGCGUcCUCg -3'
miRNA:   3'- -CGGCGCGCGUGcGCcggCCGCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 60208 0.67 0.2597
Target:  5'- cGCCGCGaCGCugGCG-CCcuCGUgCCCg -3'
miRNA:   3'- -CGGCGC-GCGugCGCcGGccGCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 59896 0.66 0.278512
Target:  5'- cGUgGCGCcUGCG-GGCCGGUGC-CCUc -3'
miRNA:   3'- -CGgCGCGcGUGCgCCGGCCGCGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.