miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 59358 0.66 0.298393
Target:  5'- uCCGCGCG-ACGCGcUCGuuuCGCUCCUg -3'
miRNA:   3'- cGGCGCGCgUGCGCcGGCc--GCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 49910 0.66 0.27086
Target:  5'- uUCGCGCGCuccaucGCGCGGCCgaucgggccggacGGUGCaggggcgUCCg -3'
miRNA:   3'- cGGCGCGCG------UGCGCCGG-------------CCGCG-------AGGg -5'
23982 5' -66.1 NC_005262.1 + 43776 0.66 0.265853
Target:  5'- cGCCGCGCGaAUuCGGCCcGGCuugGCUUgCg -3'
miRNA:   3'- -CGGCGCGCgUGcGCCGG-CCG---CGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 11077 0.86 0.009505
Target:  5'- aGCCGUGCGaGCGCGaCCGGCGUUCCCg -3'
miRNA:   3'- -CGGCGCGCgUGCGCcGGCCGCGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 27646 0.66 0.297713
Target:  5'- cGCUGCGCG-GCGUccucGCCGGgGCUgagcucgCCCu -3'
miRNA:   3'- -CGGCGCGCgUGCGc---CGGCCgCGA-------GGG- -5'
23982 5' -66.1 NC_005262.1 + 51785 0.66 0.294331
Target:  5'- cGCCGCGCacgaACGCGcucacagugucgaucGCCGGCuGCUUg- -3'
miRNA:   3'- -CGGCGCGcg--UGCGC---------------CGGCCG-CGAGgg -5'
23982 5' -66.1 NC_005262.1 + 41621 0.66 0.291646
Target:  5'- cGCUGUGCGCAUGCgucGGaucagugaCGGUGUggguguggCCCg -3'
miRNA:   3'- -CGGCGCGCGUGCG---CCg-------GCCGCGa-------GGG- -5'
23982 5' -66.1 NC_005262.1 + 51262 0.66 0.285019
Target:  5'- cGCCGCGuCGUcggcugccugcuGCGCGcUCGGCGaCUUCUu -3'
miRNA:   3'- -CGGCGC-GCG------------UGCGCcGGCCGC-GAGGG- -5'
23982 5' -66.1 NC_005262.1 + 11429 0.66 0.283055
Target:  5'- uGCCGCGCGCGaGCGGCgucuugCGGaggaggGCcgauuucuucaccgUCCCu -3'
miRNA:   3'- -CGGCGCGCGUgCGCCG------GCCg-----CG--------------AGGG- -5'
23982 5' -66.1 NC_005262.1 + 11579 0.66 0.272124
Target:  5'- aGCCGagcucgGCG-ACGCGGCCcauGUGCUCgCg -3'
miRNA:   3'- -CGGCg-----CGCgUGCGCCGGc--CGCGAGgG- -5'
23982 5' -66.1 NC_005262.1 + 41521 0.66 0.278512
Target:  5'- aGCCGCGcCGCcCGUGuuaGUCGGCGCa--- -3'
miRNA:   3'- -CGGCGC-GCGuGCGC---CGGCCGCGaggg -5'
23982 5' -66.1 NC_005262.1 + 48188 0.66 0.285019
Target:  5'- cGCgGCGCGUcacaucauCGCGcGUCGGCGCcgggcggCUCg -3'
miRNA:   3'- -CGgCGCGCGu-------GCGC-CGGCCGCGa------GGG- -5'
23982 5' -66.1 NC_005262.1 + 56912 0.66 0.298393
Target:  5'- cGUCGUG-GUGCGCGuaCucaGGCGCUCCa -3'
miRNA:   3'- -CGGCGCgCGUGCGCcgG---CCGCGAGGg -5'
23982 5' -66.1 NC_005262.1 + 57800 0.66 0.278512
Target:  5'- uGCgGCGCGCGuCGUGGC-GGC-CUaCCg -3'
miRNA:   3'- -CGgCGCGCGU-GCGCCGgCCGcGAgGG- -5'
23982 5' -66.1 NC_005262.1 + 37332 0.66 0.298393
Target:  5'- uUCGUGCGguuCACGCGGaaGGCGCgugUCg -3'
miRNA:   3'- cGGCGCGC---GUGCGCCggCCGCGa--GGg -5'
23982 5' -66.1 NC_005262.1 + 47792 0.66 0.285019
Target:  5'- aGCCGC-CGCccgGCGCGGUgcuUGGCGUcagaCCg -3'
miRNA:   3'- -CGGCGcGCG---UGCGCCG---GCCGCGag--GG- -5'
23982 5' -66.1 NC_005262.1 + 59896 0.66 0.278512
Target:  5'- cGUgGCGCcUGCG-GGCCGGUGC-CCUc -3'
miRNA:   3'- -CGgCGCGcGUGCgCCGGCCGCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 49450 0.66 0.268347
Target:  5'- -aCGCGCGCGucgccgagucgucaGCGaGCgCGGCGCgcgCCUg -3'
miRNA:   3'- cgGCGCGCGUg-------------CGC-CG-GCCGCGa--GGG- -5'
23982 5' -66.1 NC_005262.1 + 24823 0.66 0.297713
Target:  5'- gGCCGCaCGCcgaucGCGCGcGCCaGCGCgaucagcUCCUc -3'
miRNA:   3'- -CGGCGcGCG-----UGCGC-CGGcCGCG-------AGGG- -5'
23982 5' -66.1 NC_005262.1 + 11116 0.66 0.291646
Target:  5'- uGCUGCGCGCggucuuGCGCGacaGCCGccuCGCUCg- -3'
miRNA:   3'- -CGGCGCGCG------UGCGC---CGGCc--GCGAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.