miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23994 3' -55.3 NC_005262.1 + 59896 0.66 0.778958
Target:  5'- --cGUGGCGC-CuGCGGgCcgGUGCCc -3'
miRNA:   3'- cuaCGCCGUGaGcUGCCgGuaCAUGG- -5'
23994 3' -55.3 NC_005262.1 + 51141 0.66 0.778958
Target:  5'- ----aGGCGCUCGACG-CCGUGaagaagucGCCg -3'
miRNA:   3'- cuacgCCGUGAGCUGCcGGUACa-------UGG- -5'
23994 3' -55.3 NC_005262.1 + 63530 0.66 0.778958
Target:  5'- --aGCGGCACUCaGCG--CGUGUACg -3'
miRNA:   3'- cuaCGCCGUGAGcUGCcgGUACAUGg -5'
23994 3' -55.3 NC_005262.1 + 3910 0.66 0.778958
Target:  5'- --cGgGGCGCUCGGCaccuuccuccgGGCCGUcgaGgaugGCCg -3'
miRNA:   3'- cuaCgCCGUGAGCUG-----------CCGGUA---Ca---UGG- -5'
23994 3' -55.3 NC_005262.1 + 8274 0.66 0.778958
Target:  5'- -cUGCGGCGCcuucCGGCGuGCUgAUGU-CCa -3'
miRNA:   3'- cuACGCCGUGa---GCUGC-CGG-UACAuGG- -5'
23994 3' -55.3 NC_005262.1 + 30679 0.66 0.769011
Target:  5'- --aGCGGaCGCUgGACGGCgCucg-ACCg -3'
miRNA:   3'- cuaCGCC-GUGAgCUGCCG-GuacaUGG- -5'
23994 3' -55.3 NC_005262.1 + 35917 0.66 0.769011
Target:  5'- --cGCGGCGC-CGAcgccgcucCGGCcCAUGaUGCUg -3'
miRNA:   3'- cuaCGCCGUGaGCU--------GCCG-GUAC-AUGG- -5'
23994 3' -55.3 NC_005262.1 + 35737 0.66 0.769011
Target:  5'- -cUGCGGCACcgaguagcccaUCGcCcGCCGcGUGCCg -3'
miRNA:   3'- cuACGCCGUG-----------AGCuGcCGGUaCAUGG- -5'
23994 3' -55.3 NC_005262.1 + 51375 0.66 0.768009
Target:  5'- --aGCGGCAUgcgcagcagcCGGCGGCCGgugagGUucagcuuGCCg -3'
miRNA:   3'- cuaCGCCGUGa---------GCUGCCGGUa----CA-------UGG- -5'
23994 3' -55.3 NC_005262.1 + 13829 0.66 0.765999
Target:  5'- cGAUGCaauugaccauguucGGCgACUCGAUGGCgCAgcaccgGCCg -3'
miRNA:   3'- -CUACG--------------CCG-UGAGCUGCCG-GUaca---UGG- -5'
23994 3' -55.3 NC_005262.1 + 17078 0.66 0.762976
Target:  5'- --aGCGcGCGCUCGGcCGGCggcagcagggcaauaUcgGUGCCc -3'
miRNA:   3'- cuaCGC-CGUGAGCU-GCCG---------------GuaCAUGG- -5'
23994 3' -55.3 NC_005262.1 + 33780 0.66 0.758926
Target:  5'- --gGCGGCcgggaccuuGC-CGAauuUGGCCGUGUACg -3'
miRNA:   3'- cuaCGCCG---------UGaGCU---GCCGGUACAUGg -5'
23994 3' -55.3 NC_005262.1 + 24568 0.66 0.758926
Target:  5'- cGAUcGCGGCAagcgCGACGcucguGCCGUGcagcGCCa -3'
miRNA:   3'- -CUA-CGCCGUga--GCUGC-----CGGUACa---UGG- -5'
23994 3' -55.3 NC_005262.1 + 34108 0.66 0.748714
Target:  5'- --cGCGGCGCaCGauGCGGCCcgGcgucacGCCg -3'
miRNA:   3'- cuaCGCCGUGaGC--UGCCGGuaCa-----UGG- -5'
23994 3' -55.3 NC_005262.1 + 25985 0.66 0.748714
Target:  5'- cAUGCGcGCuGCUCGGCaucGaUCGUGUGCCg -3'
miRNA:   3'- cUACGC-CG-UGAGCUGc--C-GGUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 33346 0.66 0.748714
Target:  5'- --cGCGGCACcgugccgccgaUCGAcaacccgcCGGCCGUG-AUCg -3'
miRNA:   3'- cuaCGCCGUG-----------AGCU--------GCCGGUACaUGG- -5'
23994 3' -55.3 NC_005262.1 + 53571 0.66 0.738385
Target:  5'- --gGCGcGCACgcgcUGAcCGGCagCAUGUACCg -3'
miRNA:   3'- cuaCGC-CGUGa---GCU-GCCG--GUACAUGG- -5'
23994 3' -55.3 NC_005262.1 + 42149 0.66 0.738385
Target:  5'- --cGCGGCGC-CGggcccggucGCGGCCGaucgucUGUACg -3'
miRNA:   3'- cuaCGCCGUGaGC---------UGCCGGU------ACAUGg -5'
23994 3' -55.3 NC_005262.1 + 10855 0.66 0.738385
Target:  5'- gGggGCGGCAUgagUGAgGGCgCGguaauggGUGCCa -3'
miRNA:   3'- -CuaCGCCGUGa--GCUgCCG-GUa------CAUGG- -5'
23994 3' -55.3 NC_005262.1 + 43240 0.66 0.738385
Target:  5'- cGUGUGGCGCUCGAagcaGuaCGUcGUGCa -3'
miRNA:   3'- cUACGCCGUGAGCUg---CcgGUA-CAUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.