miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24000 5' -55 NC_005262.1 + 3649 0.65 0.807778
Target:  5'- gCGCAGcuucucccGGuuGUaCUCgCGGCCGUCGCu -3'
miRNA:   3'- aGCGUUu-------CCuuCA-GAG-GCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 45678 0.65 0.807778
Target:  5'- aCGguGAGGcGGUC-CCaaaACgGCCGCa -3'
miRNA:   3'- aGCguUUCCuUCAGaGGc--UGgCGGCG- -5'
24000 5' -55 NC_005262.1 + 8366 0.66 0.797396
Target:  5'- cUCGCGAgcgacgcGGGcAGcUUCCucGGCCGCUGCu -3'
miRNA:   3'- -AGCGUU-------UCCuUCaGAGG--CUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 50922 0.66 0.794529
Target:  5'- gCGCGcGGGAugccagcgugcccGUCUCCGGCgCGaaGCg -3'
miRNA:   3'- aGCGUuUCCUu------------CAGAGGCUG-GCggCG- -5'
24000 5' -55 NC_005262.1 + 15737 0.66 0.78875
Target:  5'- aUCGCGgaaggcGAGGggGaugC-CCGACgcguucaGCCGCg -3'
miRNA:   3'- -AGCGU------UUCCuuCa--GaGGCUGg------CGGCG- -5'
24000 5' -55 NC_005262.1 + 63555 0.66 0.78875
Target:  5'- gCGCGAAau--GUC-CCG-CCGCCGCc -3'
miRNA:   3'- aGCGUUUccuuCAGaGGCuGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 41166 0.66 0.78875
Target:  5'- gCGCGcAGGAGGg--C--ACCGCCGCg -3'
miRNA:   3'- aGCGUuUCCUUCagaGgcUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 61645 0.66 0.778994
Target:  5'- -gGCGAggAGGAAGUg-CUGuACCGCgGCg -3'
miRNA:   3'- agCGUU--UCCUUCAgaGGC-UGGCGgCG- -5'
24000 5' -55 NC_005262.1 + 46085 0.66 0.778994
Target:  5'- cCGCAuauuGGGAGGa---CGGCCgcGCCGCg -3'
miRNA:   3'- aGCGUu---UCCUUCagagGCUGG--CGGCG- -5'
24000 5' -55 NC_005262.1 + 4786 0.66 0.778994
Target:  5'- cUCGCAugucGGGA--UCggagCCGGCCGCguaGCg -3'
miRNA:   3'- -AGCGUu---UCCUucAGa---GGCUGGCGg--CG- -5'
24000 5' -55 NC_005262.1 + 4583 0.66 0.778994
Target:  5'- gCGguAGGGGuugcGUCUCUGGCgGCgGUu -3'
miRNA:   3'- aGCguUUCCUu---CAGAGGCUGgCGgCG- -5'
24000 5' -55 NC_005262.1 + 34924 0.66 0.778994
Target:  5'- cUCGCGcgcGAGGAAGUCggggagCUGAUCGgCa- -3'
miRNA:   3'- -AGCGU---UUCCUUCAGa-----GGCUGGCgGcg -5'
24000 5' -55 NC_005262.1 + 42478 0.66 0.778994
Target:  5'- cCGgAGAGGGugacGGUCugUCCGGCCuGCCa- -3'
miRNA:   3'- aGCgUUUCCU----UCAG--AGGCUGG-CGGcg -5'
24000 5' -55 NC_005262.1 + 56711 0.66 0.776038
Target:  5'- cUCGCuGGAGGAcguGUCcgaggcgucggcguUCgacaUGGCCGCCGCg -3'
miRNA:   3'- -AGCG-UUUCCUu--CAG--------------AG----GCUGGCGGCG- -5'
24000 5' -55 NC_005262.1 + 49008 0.66 0.773068
Target:  5'- aUCGCGcuucAGGAGGUCgUCCGAgCCcuugaccgggcccuuGCCGg -3'
miRNA:   3'- -AGCGUu---UCCUUCAG-AGGCU-GG---------------CGGCg -5'
24000 5' -55 NC_005262.1 + 5412 0.66 0.773068
Target:  5'- gCGCGGuGcGAAGcuccugccggccagCUCCGACCGCCu- -3'
miRNA:   3'- aGCGUUuC-CUUCa-------------GAGGCUGGCGGcg -5'
24000 5' -55 NC_005262.1 + 19900 0.66 0.76909
Target:  5'- gUCGgaaAAGGGAAGaCUUgCGACCGCC-Cg -3'
miRNA:   3'- -AGCg--UUUCCUUCaGAG-GCUGGCGGcG- -5'
24000 5' -55 NC_005262.1 + 58954 0.66 0.76909
Target:  5'- gCGCGcAGc-AGUCgaaccagCCGGCCGCCGg -3'
miRNA:   3'- aGCGUuUCcuUCAGa------GGCUGGCGGCg -5'
24000 5' -55 NC_005262.1 + 44398 0.66 0.76909
Target:  5'- gCGCGAGGGAuaccacCCG-CgCGCCGCa -3'
miRNA:   3'- aGCGUUUCCUucaga-GGCuG-GCGGCG- -5'
24000 5' -55 NC_005262.1 + 46530 0.66 0.76909
Target:  5'- gCGCAGcAGcccAGcgCggcgCCGGCCGCCGCu -3'
miRNA:   3'- aGCGUU-UCcu-UCa-Ga---GGCUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.