miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 18722 0.66 0.635004
Target:  5'- cGUCAAGGCgCuccucAGCuucGGCGCGgCUCGg -3'
miRNA:   3'- uUAGUUCCG-Gc----UUGu--CCGCGCgGAGC- -5'
24060 3' -57.4 NC_005262.1 + 10704 0.66 0.624132
Target:  5'- aGAUCGAGGCCGcGCGcacgcggccGGCGCuCC-CGc -3'
miRNA:   3'- -UUAGUUCCGGCuUGU---------CCGCGcGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 53788 0.66 0.624132
Target:  5'- -uUCGAcgcGGCCGggUucuGCGCGCC-CGg -3'
miRNA:   3'- uuAGUU---CCGGCuuGuc-CGCGCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 58440 0.66 0.624132
Target:  5'- cGUCAAGGaCGccccGGCAGGCGUGCg-CGg -3'
miRNA:   3'- uUAGUUCCgGC----UUGUCCGCGCGgaGC- -5'
24060 3' -57.4 NC_005262.1 + 57955 0.66 0.602418
Target:  5'- ---gAGGGCgCGAGCGcgcuugaaauuGGCGCGCC-CGc -3'
miRNA:   3'- uuagUUCCG-GCUUGU-----------CCGCGCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 11706 0.66 0.602418
Target:  5'- --cCGAGGCCGAGCugcugcuucAGGUguuGCGCaugCUCGg -3'
miRNA:   3'- uuaGUUCCGGCUUG---------UCCG---CGCG---GAGC- -5'
24060 3' -57.4 NC_005262.1 + 32632 0.66 0.601334
Target:  5'- gAAUCAGGGuuGAGCcgcccgaAGGCG-GCC-CGu -3'
miRNA:   3'- -UUAGUUCCggCUUG-------UCCGCgCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 1025 0.66 0.591594
Target:  5'- cGAUCuuGAGGCCGuggcguucgacAAUAGGCGCGa-UCGg -3'
miRNA:   3'- -UUAG--UUCCGGC-----------UUGUCCGCGCggAGC- -5'
24060 3' -57.4 NC_005262.1 + 11499 0.66 0.591594
Target:  5'- -uUCGGcGGCCcGGCGcGGCGCgGCUUCGg -3'
miRNA:   3'- uuAGUU-CCGGcUUGU-CCGCG-CGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 25215 0.66 0.580803
Target:  5'- --aUAGGGUCGGACAagcaGCGCGCCa-- -3'
miRNA:   3'- uuaGUUCCGGCUUGUc---CGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 35904 0.66 0.580803
Target:  5'- --aCGGGGCCGGcACAGuGuCGaugGCCUCGa -3'
miRNA:   3'- uuaGUUCCGGCU-UGUC-C-GCg--CGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 25899 0.66 0.580803
Target:  5'- cGAUCGAuGCCGAGCA-GCGCGCa--- -3'
miRNA:   3'- -UUAGUUcCGGCUUGUcCGCGCGgagc -5'
24060 3' -57.4 NC_005262.1 + 50254 0.67 0.570054
Target:  5'- aGAUCGAccGCCGcAACgaGGGCGCGCC-CGc -3'
miRNA:   3'- -UUAGUUc-CGGC-UUG--UCCGCGCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 47144 0.67 0.570054
Target:  5'- -cUCAAGGUCGAcgcgaccgGCgAGGCGCGCaccacuuUCGu -3'
miRNA:   3'- uuAGUUCCGGCU--------UG-UCCGCGCGg------AGC- -5'
24060 3' -57.4 NC_005262.1 + 22512 0.67 0.559354
Target:  5'- --aCGGGGUugccggCGAGCAGGCG-GCgCUCGa -3'
miRNA:   3'- uuaGUUCCG------GCUUGUCCGCgCG-GAGC- -5'
24060 3' -57.4 NC_005262.1 + 13828 0.67 0.558287
Target:  5'- --gCGAGGCUGAaugccugGCAcGGCGUGCCa-- -3'
miRNA:   3'- uuaGUUCCGGCU-------UGU-CCGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 24447 0.67 0.548711
Target:  5'- --aCAGGGuuGcagguauCAGGCGCGCCg-- -3'
miRNA:   3'- uuaGUUCCggCuu-----GUCCGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 58910 0.67 0.548711
Target:  5'- cGAUC-AGGCCGGcggcccgaccgAUGGcGCGCGCUUCu -3'
miRNA:   3'- -UUAGuUCCGGCU-----------UGUC-CGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 16598 0.67 0.517193
Target:  5'- uGGUCGAGGCgGcgaAGCAGcCGCGUUUCGa -3'
miRNA:   3'- -UUAGUUCCGgC---UUGUCcGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 17779 0.67 0.517193
Target:  5'- -uUCGAGGCCGAGCGcaaaGCcaGCCUCa -3'
miRNA:   3'- uuAGUUCCGGCUUGUccg-CG--CGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.