miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 63092 0.66 0.536446
Target:  5'- -gCGCUACaucaucgacgacgaaCUCGCCGAggugacgUGCGCGGACu -3'
miRNA:   3'- cgGCGAUG---------------GAGCGGCUg------GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 61643 0.67 0.482497
Target:  5'- aGCCGC-GCUgaugCGCUGACCGaugcacaaCGCaGAACg -3'
miRNA:   3'- -CGGCGaUGGa---GCGGCUGGC--------GCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 61393 0.68 0.425814
Target:  5'- aGCCGCUACUaCGaCCu-CgCGCGCGAGg -3'
miRNA:   3'- -CGGCGAUGGaGC-GGcuG-GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 60479 0.65 0.569398
Target:  5'- -aCGCUGCgCgaucagggcgagaCGCCgGGCCGCGCGGcGCa -3'
miRNA:   3'- cgGCGAUG-Ga------------GCGG-CUGGCGCGCU-UG- -5'
24076 5' -59.6 NC_005262.1 + 60454 0.68 0.444277
Target:  5'- aGCCGCgGCCUCGUC-AUCaGCGacaaGAGCa -3'
miRNA:   3'- -CGGCGaUGGAGCGGcUGG-CGCg---CUUG- -5'
24076 5' -59.6 NC_005262.1 + 59235 0.67 0.4923
Target:  5'- cGCCGCUGgCgcgagaugCGCCG--CGCGCGcACg -3'
miRNA:   3'- -CGGCGAUgGa-------GCGGCugGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 59140 0.66 0.542578
Target:  5'- gGCCGg-GCCgCGUCG-CCGCGCGcAUg -3'
miRNA:   3'- -CGGCgaUGGaGCGGCuGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 58916 0.66 0.542578
Target:  5'- gGCCgGCgGCC-CGaCCGAUgGCGCGcGCu -3'
miRNA:   3'- -CGG-CGaUGGaGC-GGCUGgCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 58741 0.8 0.069561
Target:  5'- cGCCGCggGCCUgcccgccgaucaggCGCCGGCCG-GCGAGCa -3'
miRNA:   3'- -CGGCGa-UGGA--------------GCGGCUGGCgCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 58711 0.67 0.46318
Target:  5'- gGCgGCaUGCCcgaggCGCUGACCGCG-GAGg -3'
miRNA:   3'- -CGgCG-AUGGa----GCGGCUGGCGCgCUUg -5'
24076 5' -59.6 NC_005262.1 + 58615 0.67 0.462225
Target:  5'- gGCCGCgcccgcGCCcgcgaCGCCGGCCgucaccgaucagcGCGcCGAGCa -3'
miRNA:   3'- -CGGCGa-----UGGa----GCGGCUGG-------------CGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 58492 0.68 0.407816
Target:  5'- gGCCaGCU-CCgacCGCCucGACCGCGUGAu- -3'
miRNA:   3'- -CGG-CGAuGGa--GCGG--CUGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 56929 0.75 0.161876
Target:  5'- gGCCGCgcUCgagaagcgcaCGCCGAuCCGCGCGGGCg -3'
miRNA:   3'- -CGGCGauGGa---------GCGGCU-GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 56140 0.69 0.390301
Target:  5'- uGCCGCUcgcggagauaGCCgUCGCCGcCgGCGUcGACa -3'
miRNA:   3'- -CGGCGA----------UGG-AGCGGCuGgCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 56117 0.66 0.512175
Target:  5'- -gCGUUuCgUCGacCCGACCGCGcCGAGCg -3'
miRNA:   3'- cgGCGAuGgAGC--GGCUGGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 55556 0.74 0.179637
Target:  5'- cGCgCGCUcggcuucgaGCUUCGCCGAcagcucauggcCCGCGCGGAUc -3'
miRNA:   3'- -CG-GCGA---------UGGAGCGGCU-----------GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 55216 0.7 0.340795
Target:  5'- cGCCGUcGCUUCGUCGcgcagGCCGCGCucAACa -3'
miRNA:   3'- -CGGCGaUGGAGCGGC-----UGGCGCGc-UUG- -5'
24076 5' -59.6 NC_005262.1 + 54436 0.67 0.482497
Target:  5'- gGCCGCcGCgCgCGCCGACCGgaaguaucaGCGcAACg -3'
miRNA:   3'- -CGGCGaUG-GaGCGGCUGGCg--------CGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 54105 0.67 0.502194
Target:  5'- cGCUGCUgcGCCUcgaCGUCGACgGCGCc--- -3'
miRNA:   3'- -CGGCGA--UGGA---GCGGCUGgCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 53340 1.1 0.000421
Target:  5'- cGCCGCUACCUCGCCGACCGCGCGAACc -3'
miRNA:   3'- -CGGCGAUGGAGCGGCUGGCGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.