Results 1 - 20 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 49439 | 0.66 | 0.563176 |
Target: 5'- aCCGCcGCCa-GUCGACgCGCGCaAGCa -3' miRNA: 3'- cGGCGaUGGagCGGCUG-GCGCGcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 8224 | 0.66 | 0.532372 |
Target: 5'- cGCgCGCUGCga-GCCGGCCGgGuCGAu- -3' miRNA: 3'- -CG-GCGAUGgagCGGCUGGCgC-GCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 46769 | 0.66 | 0.532372 |
Target: 5'- aGCUGCUuuuccGCCUCgGUCGACUucagcacgacgaGCGCGcGCu -3' miRNA: 3'- -CGGCGA-----UGGAG-CGGCUGG------------CGCGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 58741 | 0.8 | 0.069561 |
Target: 5'- cGCCGCggGCCUgcccgccgaucaggCGCCGGCCG-GCGAGCa -3' miRNA: 3'- -CGGCGa-UGGA--------------GCGGCUGGCgCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6375 | 0.66 | 0.562141 |
Target: 5'- uGCCGgaGCgUUGUCGGCCGCcuucucgGCGGu- -3' miRNA: 3'- -CGGCgaUGgAGCGGCUGGCG-------CGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6809 | 0.66 | 0.560072 |
Target: 5'- cGUCGCgcuugucguaggcggUCUUGCCGACCacgccCGCGAACu -3' miRNA: 3'- -CGGCGau-------------GGAGCGGCUGGc----GCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 52823 | 0.66 | 0.552848 |
Target: 5'- cGgCGUUcCCggcgCGCCGAacaGCGCGAAUg -3' miRNA: 3'- -CgGCGAuGGa---GCGGCUgg-CGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 21647 | 0.66 | 0.552848 |
Target: 5'- gGCCGCgACCggGCCcggcGCCGCGUaGACc -3' miRNA: 3'- -CGGCGaUGGagCGGc---UGGCGCGcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6666 | 0.66 | 0.542578 |
Target: 5'- gGCCGCgauguaCUCGCCGgagcccuugaGCUGCGUgccgugGAACa -3' miRNA: 3'- -CGGCGaug---GAGCGGC----------UGGCGCG------CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 10834 | 0.66 | 0.532372 |
Target: 5'- uGCCcgGCUcgagcACCUUGCCG-CCG-GCGAAg -3' miRNA: 3'- -CGG--CGA-----UGGAGCGGCuGGCgCGCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 63092 | 0.66 | 0.536446 |
Target: 5'- -gCGCUACaucaucgacgacgaaCUCGCCGAggugacgUGCGCGGACu -3' miRNA: 3'- cgGCGAUG---------------GAGCGGCUg------GCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 41583 | 0.66 | 0.542578 |
Target: 5'- gGCCGUgAgCUUGUCGA--GCGCGAGCc -3' miRNA: 3'- -CGGCGaUgGAGCGGCUggCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 45961 | 0.66 | 0.563176 |
Target: 5'- gGCCGCguuuccAUCUCGCCaguuGCCGgGguCGAACg -3' miRNA: 3'- -CGGCGa-----UGGAGCGGc---UGGCgC--GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 20738 | 0.66 | 0.532372 |
Target: 5'- uGCCGCgGCgCgcggUGCCGGCCGgGuCGAu- -3' miRNA: 3'- -CGGCGaUG-Ga---GCGGCUGGCgC-GCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 2723 | 0.66 | 0.563176 |
Target: 5'- gGCUGCgcCUUCGUCGACgGCGUa--- -3' miRNA: 3'- -CGGCGauGGAGCGGCUGgCGCGcuug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 38820 | 0.66 | 0.546679 |
Target: 5'- uGCCGCcucgACCaaGCCGGCCuguuccugaagcuggGCGCGccGCg -3' miRNA: 3'- -CGGCGa---UGGagCGGCUGG---------------CGCGCu-UG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 24998 | 0.66 | 0.532372 |
Target: 5'- uCCGUUGCUcgCGCCGugCaGCGCaugaucucGAACg -3' miRNA: 3'- cGGCGAUGGa-GCGGCugG-CGCG--------CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 53078 | 0.66 | 0.532372 |
Target: 5'- uUUGCgggagCGCCGGCCGCGUGcGCg -3' miRNA: 3'- cGGCGauggaGCGGCUGGCGCGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 51449 | 0.66 | 0.562141 |
Target: 5'- gGCCGUauuCCUucaaugcUGCCG-CCGCGCGcuGCg -3' miRNA: 3'- -CGGCGau-GGA-------GCGGCuGGCGCGCu-UG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 23647 | 0.66 | 0.552848 |
Target: 5'- cGCCGC-ACCcUGuCCGgguuGCaGCGCGAGCg -3' miRNA: 3'- -CGGCGaUGGaGC-GGC----UGgCGCGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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