miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24081 5' -55.8 NC_005262.1 + 12883 0.66 0.748881
Target:  5'- --aCGG-UGACGcUCGUGCGCAucAGCc- -3'
miRNA:   3'- acaGCCuGCUGC-AGCACGCGU--UCGag -5'
24081 5' -55.8 NC_005262.1 + 20091 0.66 0.748881
Target:  5'- uUGUCGGugaGCG-CGUCGccGCGCGaauucggcccGGCUUg -3'
miRNA:   3'- -ACAGCC---UGCuGCAGCa-CGCGU----------UCGAG- -5'
24081 5' -55.8 NC_005262.1 + 4387 0.66 0.738599
Target:  5'- gGUCGaGcguugcgcguGCGAUGUCGcgcgccugcUGCGCGAGCg- -3'
miRNA:   3'- aCAGC-C----------UGCUGCAGC---------ACGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 2255 0.66 0.738599
Target:  5'- -cUCGGGCcGCGUCGaugacggcccGCGCAAGUUUc -3'
miRNA:   3'- acAGCCUGcUGCAGCa---------CGCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 51520 0.66 0.738599
Target:  5'- cGgCGaGACGAC--CGUGCGCAacacggcgaccGGCUCg -3'
miRNA:   3'- aCaGC-CUGCUGcaGCACGCGU-----------UCGAG- -5'
24081 5' -55.8 NC_005262.1 + 43277 0.66 0.728213
Target:  5'- aGUgGGGUGAgGUCGU-CGCGAGCg- -3'
miRNA:   3'- aCAgCCUGCUgCAGCAcGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 33288 0.66 0.728213
Target:  5'- gGUCGG-CGACGaccaucUCGUGCGCcugacGCa- -3'
miRNA:   3'- aCAGCCuGCUGC------AGCACGCGuu---CGag -5'
24081 5' -55.8 NC_005262.1 + 50848 0.66 0.728213
Target:  5'- gGUCGG-CGAUGcCGUcGCGCAcGCc- -3'
miRNA:   3'- aCAGCCuGCUGCaGCA-CGCGUuCGag -5'
24081 5' -55.8 NC_005262.1 + 16307 0.66 0.728213
Target:  5'- cGUCGGAguagcCGgcguucuucagcGCGUCGguuuucGCuGCGAGCUCg -3'
miRNA:   3'- aCAGCCU-----GC------------UGCAGCa-----CG-CGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 56692 0.66 0.728213
Target:  5'- --aCGG-CGACGacagCGUGCGCucGCUg -3'
miRNA:   3'- acaGCCuGCUGCa---GCACGCGuuCGAg -5'
24081 5' -55.8 NC_005262.1 + 14915 0.66 0.717733
Target:  5'- uUGcCGGucACGACGUCGgacaguUGCGCGGGgUg -3'
miRNA:   3'- -ACaGCC--UGCUGCAGC------ACGCGUUCgAg -5'
24081 5' -55.8 NC_005262.1 + 10782 0.66 0.707172
Target:  5'- cGcCGGGCGcGCGguacUGcUGCGCGAGCUg -3'
miRNA:   3'- aCaGCCUGC-UGCa---GC-ACGCGUUCGAg -5'
24081 5' -55.8 NC_005262.1 + 41702 0.66 0.707172
Target:  5'- gGUCGacguuGACcGCGUgCGUGUGCGAGC-Cg -3'
miRNA:   3'- aCAGC-----CUGcUGCA-GCACGCGUUCGaG- -5'
24081 5' -55.8 NC_005262.1 + 16238 0.67 0.696539
Target:  5'- cGUCGGGCGACGUCGccuuuuUGUaCuGGC-Cg -3'
miRNA:   3'- aCAGCCUGCUGCAGC------ACGcGuUCGaG- -5'
24081 5' -55.8 NC_005262.1 + 17188 0.67 0.696539
Target:  5'- cGUCGGGCGggaucugugGCGUC-UGCgGCGAGgaCg -3'
miRNA:   3'- aCAGCCUGC---------UGCAGcACG-CGUUCgaG- -5'
24081 5' -55.8 NC_005262.1 + 56764 0.67 0.696539
Target:  5'- cGUCGGGCGACGa---GCGCuacaugAAGCUg -3'
miRNA:   3'- aCAGCCUGCUGCagcaCGCG------UUCGAg -5'
24081 5' -55.8 NC_005262.1 + 12438 0.67 0.685846
Target:  5'- cG-CGGACGGCG-CgGUGC-CGAGCUg -3'
miRNA:   3'- aCaGCCUGCUGCaG-CACGcGUUCGAg -5'
24081 5' -55.8 NC_005262.1 + 27032 0.67 0.685846
Target:  5'- gGUCGGGCucacaaaugcgGAaauCGUCGUGCGCAGaacuGCg- -3'
miRNA:   3'- aCAGCCUG-----------CU---GCAGCACGCGUU----CGag -5'
24081 5' -55.8 NC_005262.1 + 34003 0.67 0.679405
Target:  5'- aUGggcgCGGACGGCGugacgccgggccgcaUCGUGCGCc-GCgUCg -3'
miRNA:   3'- -ACa---GCCUGCUGC---------------AGCACGCGuuCG-AG- -5'
24081 5' -55.8 NC_005262.1 + 33899 0.67 0.670794
Target:  5'- cGUCGGcCGGCGgcccgaucgguagCGgcgGUGCcGAGCUCg -3'
miRNA:   3'- aCAGCCuGCUGCa------------GCa--CGCG-UUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.