miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 38047 0.66 0.463342
Target:  5'- cGGGCCG----UGAGCGGCUugccGGccuGCGCg -3'
miRNA:   3'- -UCCGGCugcaGCUCGCCGA----CCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 56165 0.66 0.463342
Target:  5'- -cGCCGGCGUCGAcauuCGGCcaacguccGGuaAGCGCg -3'
miRNA:   3'- ucCGGCUGCAGCUc---GCCGa-------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 26542 0.66 0.463342
Target:  5'- cGGCCGuuGuUCGuGCGGUUcacgcGGAagGCGCg -3'
miRNA:   3'- uCCGGCugC-AGCuCGCCGA-----CCU--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 53713 0.66 0.463342
Target:  5'- cGGCCG-CGUCGAa-GGCcGuGGCGCu -3'
miRNA:   3'- uCCGGCuGCAGCUcgCCGaCcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60343 0.66 0.463342
Target:  5'- gAGGUCGACGggcgguUCGAGCuGauccccGAGCGCg -3'
miRNA:   3'- -UCCGGCUGC------AGCUCGcCgac---CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51277 0.66 0.463342
Target:  5'- gAGGCgaucGCGUCGcGCGGCaucUGaAGCGCg -3'
miRNA:   3'- -UCCGgc--UGCAGCuCGCCG---ACcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 58914 0.66 0.453938
Target:  5'- cAGGCCGGCGgccCGAccgauggcGCGcGCUucucGGucGGCGCg -3'
miRNA:   3'- -UCCGGCUGCa--GCU--------CGC-CGA----CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43285 0.66 0.453938
Target:  5'- gAGGUCGuCG-CGAGCGccgcGCcgaUGGuGCGCg -3'
miRNA:   3'- -UCCGGCuGCaGCUCGC----CG---ACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17222 0.66 0.444638
Target:  5'- cGGcGCUGGCGUCGuggucgucgugGGCGucGCgGGAGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGC-----------UCGC--CGaCCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 2463 0.66 0.444638
Target:  5'- cGGUgGACGUUGAGCaugcGCgUGGugccGCGCu -3'
miRNA:   3'- uCCGgCUGCAGCUCGc---CG-ACCu---CGCG- -5'
24091 3' -61.6 NC_005262.1 + 12805 0.66 0.444638
Target:  5'- uGGgCGGCG-CGcAGcCGGCgcgugaagaaGGAGCGCg -3'
miRNA:   3'- uCCgGCUGCaGC-UC-GCCGa---------CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 59607 0.66 0.444638
Target:  5'- cAGGCCGugGUCGuG-GGCgagaaGAaccucGCGCg -3'
miRNA:   3'- -UCCGGCugCAGCuCgCCGac---CU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 62668 0.66 0.435447
Target:  5'- gGGGUgGGuuuaGUCcgcccGGCGGCggcaggGGAGCGCg -3'
miRNA:   3'- -UCCGgCUg---CAGc----UCGCCGa-----CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 24908 0.66 0.435447
Target:  5'- cGGCCagccggagGACGcCGAGgcaUGGCgGGAuGCGCa -3'
miRNA:   3'- uCCGG--------CUGCaGCUC---GCCGaCCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 24327 0.66 0.434534
Target:  5'- uGGUCGGCGcgaUCGAcauGCGGCUcugcgucGGcGCGCc -3'
miRNA:   3'- uCCGGCUGC---AGCU---CGCCGA-------CCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 49395 0.66 0.43271
Target:  5'- -cGCgGGCGUCGcaacuggucuguucGGCGGCaUGGGcgaccGCGCa -3'
miRNA:   3'- ucCGgCUGCAGC--------------UCGCCG-ACCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 9134 0.66 0.426365
Target:  5'- gAGGaCCGGCGcCGGGcCGGUcGGAaUGCg -3'
miRNA:   3'- -UCC-GGCUGCaGCUC-GCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 17081 0.66 0.426365
Target:  5'- uAGGCgCGccCGUCGAcGCGGC-GGGcCGCg -3'
miRNA:   3'- -UCCG-GCu-GCAGCU-CGCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 3619 0.66 0.426365
Target:  5'- cAGGCUGuACa-CGAGguccauCGGCUGGGcGCGCa -3'
miRNA:   3'- -UCCGGC-UGcaGCUC------GCCGACCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 39586 0.66 0.425464
Target:  5'- cGuGCCGGCGcagCGucGCGGCUGccgccucGGGCGUg -3'
miRNA:   3'- uC-CGGCUGCa--GCu-CGCCGAC-------CUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.