miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 5' -53.6 NC_005262.1 + 10224 0.66 0.855799
Target:  5'- cCGUcUCGCGACGACCgaucgauacaAGGACAAgGCg -3'
miRNA:   3'- cGCGuGGUGCUGCUGG----------UCUUGUU-CGa -5'
24091 5' -53.6 NC_005262.1 + 490 0.66 0.855799
Target:  5'- cGCGCGuguuCCACGuCGACgCcGAGCcAGCa -3'
miRNA:   3'- -CGCGU----GGUGCuGCUG-GuCUUGuUCGa -5'
24091 5' -53.6 NC_005262.1 + 20240 0.66 0.855799
Target:  5'- aCGuCugCGCGAgGAauCCGGAcgGCAGGCg -3'
miRNA:   3'- cGC-GugGUGCUgCU--GGUCU--UGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 60715 0.66 0.855799
Target:  5'- uGCGgcaaACCgAUGACGGCgCAGAaccucaACAAGCa -3'
miRNA:   3'- -CGCg---UGG-UGCUGCUG-GUCU------UGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 48475 0.66 0.855799
Target:  5'- cGCGaGCCGCGugGGCaCGGGcgGCGcgacGGCa -3'
miRNA:   3'- -CGCgUGGUGCugCUG-GUCU--UGU----UCGa -5'
24091 5' -53.6 NC_005262.1 + 35846 0.66 0.855799
Target:  5'- -gGCGCCGCGAcCGcCCAGAuguuugugcgcgGCGAcGCg -3'
miRNA:   3'- cgCGUGGUGCU-GCuGGUCU------------UGUU-CGa -5'
24091 5' -53.6 NC_005262.1 + 38798 0.66 0.855799
Target:  5'- uGCGCugCACGGCG-CgAGcAACGGauacGCUg -3'
miRNA:   3'- -CGCGugGUGCUGCuGgUC-UUGUU----CGA- -5'
24091 5' -53.6 NC_005262.1 + 47909 0.66 0.855799
Target:  5'- cGCGCGCaCGCGGCGgAUCAGcGCcaucGCg -3'
miRNA:   3'- -CGCGUG-GUGCUGC-UGGUCuUGuu--CGa -5'
24091 5' -53.6 NC_005262.1 + 63497 0.66 0.854961
Target:  5'- gGCGUGCC-CGACGccugucgcaaggaGCCGGAGCc-GCg -3'
miRNA:   3'- -CGCGUGGuGCUGC-------------UGGUCUUGuuCGa -5'
24091 5' -53.6 NC_005262.1 + 46807 0.66 0.847323
Target:  5'- cGCGCGCUcggcCGGCGGCagCAGGGCAauaucggugcccGGCUu -3'
miRNA:   3'- -CGCGUGGu---GCUGCUG--GUCUUGU------------UCGA- -5'
24091 5' -53.6 NC_005262.1 + 60623 0.66 0.847323
Target:  5'- uGCGCGCgAuUGGCGACCuGcGCAuGCg -3'
miRNA:   3'- -CGCGUGgU-GCUGCUGGuCuUGUuCGa -5'
24091 5' -53.6 NC_005262.1 + 29703 0.66 0.847323
Target:  5'- uGCGCaACCGCc-CGcACCGGGcCAAGCa -3'
miRNA:   3'- -CGCG-UGGUGcuGC-UGGUCUuGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 28121 0.66 0.847323
Target:  5'- cGUGC-CCGCu-CGACguGAGCAcgAGCUg -3'
miRNA:   3'- -CGCGuGGUGcuGCUGguCUUGU--UCGA- -5'
24091 5' -53.6 NC_005262.1 + 10435 0.66 0.847323
Target:  5'- gGCGCAUgGCGcCGAUCAGGuucGCGcggucGGCg -3'
miRNA:   3'- -CGCGUGgUGCuGCUGGUCU---UGU-----UCGa -5'
24091 5' -53.6 NC_005262.1 + 32979 0.66 0.847323
Target:  5'- gGCGUgaagAUCACGgucGCGGCgCAGAcGCAGGCa -3'
miRNA:   3'- -CGCG----UGGUGC---UGCUG-GUCU-UGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 29479 0.66 0.847323
Target:  5'- aGUGCAggGCGGCGACCGugccguucgcGAACucGCUg -3'
miRNA:   3'- -CGCGUggUGCUGCUGGU----------CUUGuuCGA- -5'
24091 5' -53.6 NC_005262.1 + 43815 0.66 0.847323
Target:  5'- gGCG-AUCGCGGCGACaCGGccGCGGGCc -3'
miRNA:   3'- -CGCgUGGUGCUGCUG-GUCu-UGUUCGa -5'
24091 5' -53.6 NC_005262.1 + 15311 0.66 0.847323
Target:  5'- cGCGCAUgGgCgGGCGGCCGucGAGCAacAGCUu -3'
miRNA:   3'- -CGCGUGgU-G-CUGCUGGU--CUUGU--UCGA- -5'
24091 5' -53.6 NC_005262.1 + 58901 0.66 0.838621
Target:  5'- cGCGCugCGCGAUcaGGCCGGcggcccGACcgauGGCg -3'
miRNA:   3'- -CGCGugGUGCUG--CUGGUC------UUGu---UCGa -5'
24091 5' -53.6 NC_005262.1 + 60072 0.66 0.838621
Target:  5'- uGCGCaacGCCGCGcGCGACgCGcuGACGGGCa -3'
miRNA:   3'- -CGCG---UGGUGC-UGCUG-GUc-UUGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.