miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24092 3' -55.8 NC_005262.1 + 17023 0.66 0.756394
Target:  5'- cGUUGAUACCGCgcgucgccgccuguaCGAcCGGcgUGGCGGc -3'
miRNA:   3'- -CGACUAUGGCG---------------GCUcGUCuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 32715 0.66 0.752334
Target:  5'- gGCcGcgGCuCGCCcuuCAGGUCGGCGAg -3'
miRNA:   3'- -CGaCuaUG-GCGGcucGUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 17933 0.66 0.752334
Target:  5'- aGCgUGAUGCCGuCCGccuucaucuGCucguGAUCGGCa- -3'
miRNA:   3'- -CG-ACUAUGGC-GGCu--------CGu---CUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 31016 0.66 0.752334
Target:  5'- gGCgc--GCCGCCggugucGAGCuuGUCGGCGAu -3'
miRNA:   3'- -CGacuaUGGCGG------CUCGucUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 3488 0.66 0.752334
Target:  5'- uGCgGAU-CgCGcCCGAcGCGGAUCGGCu- -3'
miRNA:   3'- -CGaCUAuG-GC-GGCU-CGUCUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 47287 0.66 0.752334
Target:  5'- --gGAcGCCGCgGcGaAGAUCGGCGAg -3'
miRNA:   3'- cgaCUaUGGCGgCuCgUCUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 20748 0.66 0.752334
Target:  5'- cGC-GGUGCCgGCCGGGUcGAUguacucguagcUGGCGAg -3'
miRNA:   3'- -CGaCUAUGG-CGGCUCGuCUA-----------GCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 233 0.66 0.742104
Target:  5'- cGCU---ACCGCCG-GCGG--CGGCGGg -3'
miRNA:   3'- -CGAcuaUGGCGGCuCGUCuaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 450 0.66 0.742104
Target:  5'- cGCaUGAU-CCGCCuugaGGGCGuuGAccUCGGCGAc -3'
miRNA:   3'- -CG-ACUAuGGCGG----CUCGU--CU--AGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 6099 0.66 0.742104
Target:  5'- cGgUGAU-CCGCaCGuuGCGGAaCGGCGGc -3'
miRNA:   3'- -CgACUAuGGCG-GCu-CGUCUaGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 30432 0.66 0.742104
Target:  5'- --cGAUcacgGCCGgCGGGUugucGAUCGGCGGc -3'
miRNA:   3'- cgaCUA----UGGCgGCUCGu---CUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 58648 0.66 0.731767
Target:  5'- --cGAUcaGCgCGCCGAGCAGgAUCaGCGc -3'
miRNA:   3'- cgaCUA--UG-GCGGCUCGUC-UAGcCGCu -5'
24092 3' -55.8 NC_005262.1 + 46990 0.66 0.731767
Target:  5'- gGCgaagGcAUGgCGCgCGAcGCAGAUgGGCGAc -3'
miRNA:   3'- -CGa---C-UAUgGCG-GCU-CGUCUAgCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 54927 0.66 0.731767
Target:  5'- cCUGAcGCUGCCGGGCGuGUCGcuGCGc -3'
miRNA:   3'- cGACUaUGGCGGCUCGUcUAGC--CGCu -5'
24092 3' -55.8 NC_005262.1 + 30063 0.66 0.728646
Target:  5'- --cGAUGCUGCCGgcgacgacgacgccGGCaAGAagGGCGAc -3'
miRNA:   3'- cgaCUAUGGCGGC--------------UCG-UCUagCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 29216 0.66 0.721333
Target:  5'- --aGAUGCCGCCGG--AGAUCGcGCu- -3'
miRNA:   3'- cgaCUAUGGCGGCUcgUCUAGC-CGcu -5'
24092 3' -55.8 NC_005262.1 + 21701 0.66 0.721333
Target:  5'- uGCUGua--CGCgGGcacGCAGAUCGGCa- -3'
miRNA:   3'- -CGACuaugGCGgCU---CGUCUAGCCGcu -5'
24092 3' -55.8 NC_005262.1 + 31950 0.66 0.717135
Target:  5'- gGUUGAUGCCGCgugcaccCGAcagguagaugaacaGCAGcucGUCGGUGAa -3'
miRNA:   3'- -CGACUAUGGCG-------GCU--------------CGUC---UAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 5035 0.66 0.710813
Target:  5'- aGUUGcucGCCgGCCGGcGCcuGAUCGGCGGg -3'
miRNA:   3'- -CGACua-UGG-CGGCU-CGu-CUAGCCGCU- -5'
24092 3' -55.8 NC_005262.1 + 40552 0.66 0.710813
Target:  5'- gGCUcuUACgCGCCGGGCAacacCGGCGGu -3'
miRNA:   3'- -CGAcuAUG-GCGGCUCGUcua-GCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.