miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 3' -62.5 NC_005262.1 + 14459 0.66 0.449731
Target:  5'- aGCgCGGCgCGcGCCUGCUcGUCGGUc -3'
miRNA:   3'- gCGaGCUGgGCcUGGACGGcCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 29199 0.66 0.43163
Target:  5'- cCGCUCGAUCUcguGGAUCacggcGCCGcaCGGCg -3'
miRNA:   3'- -GCGAGCUGGG---CCUGGa----CGGCcaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 5168 0.66 0.43163
Target:  5'- cCGCUCGACugCCGaGCCUGaCGGUgCaGCg -3'
miRNA:   3'- -GCGAGCUG--GGCcUGGACgGCCA-GcCG- -5'
24093 3' -62.5 NC_005262.1 + 13851 0.66 0.43163
Target:  5'- gGCUCGAacgucacgccaUCCGGGCCgGUC-GUCaGGCg -3'
miRNA:   3'- gCGAGCU-----------GGGCCUGGaCGGcCAG-CCG- -5'
24093 3' -62.5 NC_005262.1 + 57752 0.66 0.43163
Target:  5'- gCGCUCGagggcauuGCgCGcaauGGCgUGCUGGUUGGCg -3'
miRNA:   3'- -GCGAGC--------UGgGC----CUGgACGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 46449 0.66 0.43163
Target:  5'- cCGCcCG-CgCCGGACCcgaaUGCCGcGcCGGCc -3'
miRNA:   3'- -GCGaGCuG-GGCCUGG----ACGGC-CaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 3586 0.66 0.42274
Target:  5'- aGCUUG-CC--GACCUcGCCGGcCGGCu -3'
miRNA:   3'- gCGAGCuGGgcCUGGA-CGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 30099 0.66 0.42274
Target:  5'- uGUuggCGGCCgGGACCuUGCCGaauUUGGCc -3'
miRNA:   3'- gCGa--GCUGGgCCUGG-ACGGCc--AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 7982 0.66 0.413961
Target:  5'- gCGCUcaCGACCuCGuaGCC-GCCGG-CGGCg -3'
miRNA:   3'- -GCGA--GCUGG-GCc-UGGaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 60726 0.67 0.396745
Target:  5'- aCGa-CGACaaGGACC-GCUGGcUCGGCg -3'
miRNA:   3'- -GCgaGCUGggCCUGGaCGGCC-AGCCG- -5'
24093 3' -62.5 NC_005262.1 + 25640 0.67 0.396745
Target:  5'- gGCUCcauCCCGG-CCgUGCCGaaGUCGGg -3'
miRNA:   3'- gCGAGcu-GGGCCuGG-ACGGC--CAGCCg -5'
24093 3' -62.5 NC_005262.1 + 50817 0.67 0.396745
Target:  5'- aCGCgCGGguCgCGGucgucgacGCCgaGCCGGUCGGCg -3'
miRNA:   3'- -GCGaGCU--GgGCC--------UGGa-CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 31091 0.67 0.388312
Target:  5'- aGCUCGAugaugucgcccaCCUGGAg--GCCGG-CGGCc -3'
miRNA:   3'- gCGAGCU------------GGGCCUggaCGGCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 18937 0.67 0.388312
Target:  5'- aGCgUGAUUCGGAugucguCCaugGCCGGUUGGCc -3'
miRNA:   3'- gCGaGCUGGGCCU------GGa--CGGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 7040 0.67 0.379997
Target:  5'- gCGCUCGucGCCCGacGCCaGCgCGG-CGGCc -3'
miRNA:   3'- -GCGAGC--UGGGCc-UGGaCG-GCCaGCCG- -5'
24093 3' -62.5 NC_005262.1 + 8136 0.67 0.379997
Target:  5'- uGUUCGugaCCGG-CgUGCCGGacgCGGCc -3'
miRNA:   3'- gCGAGCug-GGCCuGgACGGCCa--GCCG- -5'
24093 3' -62.5 NC_005262.1 + 12889 0.67 0.379997
Target:  5'- aCGCUCGugcgcaucaGCCCcGGCCUGCUGGaCGa- -3'
miRNA:   3'- -GCGAGC---------UGGGcCUGGACGGCCaGCcg -5'
24093 3' -62.5 NC_005262.1 + 13688 0.67 0.377526
Target:  5'- gCGCUCGGCCggcuucuguucgcgCGGcGCggGuUCGGUCGGCg -3'
miRNA:   3'- -GCGAGCUGG--------------GCC-UGgaC-GGCCAGCCG- -5'
24093 3' -62.5 NC_005262.1 + 28083 0.67 0.371802
Target:  5'- gGCUCGACauGGACgaCUGCCGGUa--- -3'
miRNA:   3'- gCGAGCUGggCCUG--GACGGCCAgccg -5'
24093 3' -62.5 NC_005262.1 + 47726 0.67 0.371802
Target:  5'- gGCUCGccgccuguAUCUGGugCgccGCCGGccgCGGCg -3'
miRNA:   3'- gCGAGC--------UGGGCCugGa--CGGCCa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.