miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24093 5' -56.4 NC_005262.1 + 17490 0.66 0.669781
Target:  5'- aGCGCGCGCCGCgcgcgacgcguCGAUCGGcagccUGAcgACGAu -3'
miRNA:   3'- -UGCGCGCGGCG-----------GUUAGUCc----ACU--UGUU- -5'
24093 5' -56.4 NC_005262.1 + 36341 0.66 0.658827
Target:  5'- uGCGUGCGCCGUCAggcuugaucgAUCGGcacGUGGuCAAg -3'
miRNA:   3'- -UGCGCGCGGCGGU----------UAGUC---CACUuGUU- -5'
24093 5' -56.4 NC_005262.1 + 59591 0.66 0.658827
Target:  5'- cGCGCGCGaCuaCGAUCAGGccguggucgUGGGCGAg -3'
miRNA:   3'- -UGCGCGCgGcgGUUAGUCC---------ACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 10236 0.66 0.647849
Target:  5'- aGCGCGUGCgCGCCGAgcaccaucUCGGGguacgcGGCGAa -3'
miRNA:   3'- -UGCGCGCG-GCGGUU--------AGUCCac----UUGUU- -5'
24093 5' -56.4 NC_005262.1 + 63323 0.66 0.647849
Target:  5'- cACGCGCGCCGC--GUCgccgAGGUcAACGc -3'
miRNA:   3'- -UGCGCGCGGCGguUAG----UCCAcUUGUu -5'
24093 5' -56.4 NC_005262.1 + 14411 0.66 0.647849
Target:  5'- -gGUGCGUCGCCucaugccuGUCgAGuGUGAGCGAu -3'
miRNA:   3'- ugCGCGCGGCGGu-------UAG-UC-CACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 46805 0.66 0.647849
Target:  5'- aGCGCGCGCUcgGCCGGcggCAGcaGGGCAAu -3'
miRNA:   3'- -UGCGCGCGG--CGGUUa--GUCcaCUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 44153 0.66 0.636856
Target:  5'- gACGCGCG-CG-CGAUCGGGcagGAGCGc -3'
miRNA:   3'- -UGCGCGCgGCgGUUAGUCCa--CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 58898 0.66 0.636856
Target:  5'- uGC-CGCGCUGCgCGAUCAGGccGGCGg -3'
miRNA:   3'- -UGcGCGCGGCG-GUUAGUCCacUUGUu -5'
24093 5' -56.4 NC_005262.1 + 20744 0.66 0.625859
Target:  5'- gGCGCGCGgUGCCGGcCGGGUcGAUg- -3'
miRNA:   3'- -UGCGCGCgGCGGUUaGUCCAcUUGuu -5'
24093 5' -56.4 NC_005262.1 + 35397 0.67 0.614867
Target:  5'- cACGUGcCGCuCGUCGuUCGGGUcGAACAc -3'
miRNA:   3'- -UGCGC-GCG-GCGGUuAGUCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 12481 0.67 0.614867
Target:  5'- cCGCGCGCggaugCGCCcAUCuGGUcGAGCGg -3'
miRNA:   3'- uGCGCGCG-----GCGGuUAGuCCA-CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 4555 0.67 0.603891
Target:  5'- uGCGCGCGCggcgcaucucgCGCCAGcggcggcgcugcUCGGGcgUGAGCGc -3'
miRNA:   3'- -UGCGCGCG-----------GCGGUU------------AGUCC--ACUUGUu -5'
24093 5' -56.4 NC_005262.1 + 53248 0.67 0.603891
Target:  5'- cUGCGCGCgGCCGGUCGcGUcGGCAu -3'
miRNA:   3'- uGCGCGCGgCGGUUAGUcCAcUUGUu -5'
24093 5' -56.4 NC_005262.1 + 46666 0.67 0.586383
Target:  5'- gACGCGCGCguucuugugguccauCGCCGcgC-GGUGGACc- -3'
miRNA:   3'- -UGCGCGCG---------------GCGGUuaGuCCACUUGuu -5'
24093 5' -56.4 NC_005262.1 + 4876 0.67 0.571142
Target:  5'- aGCGCGCGCCaUCGGUCGGGccgccggccUGAucgcGCAGc -3'
miRNA:   3'- -UGCGCGCGGcGGUUAGUCC---------ACU----UGUU- -5'
24093 5' -56.4 NC_005262.1 + 45629 0.68 0.549544
Target:  5'- -gGgGCGCuCGCgCGAUCAGGcGGGCAc -3'
miRNA:   3'- ugCgCGCG-GCG-GUUAGUCCaCUUGUu -5'
24093 5' -56.4 NC_005262.1 + 45920 0.68 0.549544
Target:  5'- uGCGCGCGCCGaucaAGUCGGGcuacgucgaGGACGg -3'
miRNA:   3'- -UGCGCGCGGCgg--UUAGUCCa--------CUUGUu -5'
24093 5' -56.4 NC_005262.1 + 20167 0.68 0.549544
Target:  5'- gACGaaCG-CGCCAGUCAGGaUGGACAGg -3'
miRNA:   3'- -UGCgcGCgGCGGUUAGUCC-ACUUGUU- -5'
24093 5' -56.4 NC_005262.1 + 22579 0.68 0.528205
Target:  5'- -aGCGUGCCGgCAGUCAuacGGUGcuCGAa -3'
miRNA:   3'- ugCGCGCGGCgGUUAGU---CCACuuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.