miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24094 3' -56.3 NC_005262.1 + 16465 0.66 0.69759
Target:  5'- -cGCuGCGucuCGAGCGCCGaAUCGGu -3'
miRNA:   3'- caCGuCGUcuuGCUCGCGGCgUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 42483 0.66 0.69759
Target:  5'- cGUGCGcGUAGGugGGGUuggugagcaGCCGCGagGAa -3'
miRNA:   3'- -CACGU-CGUCUugCUCG---------CGGCGUagCU- -5'
24094 3' -56.3 NC_005262.1 + 22632 0.66 0.69759
Target:  5'- -cGCGGCGGugcccuccuGCGcGCGCUGCA-CGGu -3'
miRNA:   3'- caCGUCGUCu--------UGCuCGCGGCGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 6640 0.66 0.69759
Target:  5'- uGUGCGGCGGcgcuuCGAucGCGUCGCcguccUCGAu -3'
miRNA:   3'- -CACGUCGUCuu---GCU--CGCGGCGu----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 44988 0.66 0.69759
Target:  5'- cGUGCAGCAGucc--GCGCgGCAggCGGc -3'
miRNA:   3'- -CACGUCGUCuugcuCGCGgCGUa-GCU- -5'
24094 3' -56.3 NC_005262.1 + 59179 0.66 0.693288
Target:  5'- -aGCAGCucacgggcccgcuGAugGAGCGCCuuGCgaaGUCGGg -3'
miRNA:   3'- caCGUCGu------------CUugCUCGCGG--CG---UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 33109 0.66 0.686818
Target:  5'- cUGgaGGCGGu-CGAGCGCCGUccagcguccgcuGUCGAu -3'
miRNA:   3'- cACg-UCGUCuuGCUCGCGGCG------------UAGCU- -5'
24094 3' -56.3 NC_005262.1 + 58208 0.66 0.686818
Target:  5'- cUGCGG-AGAGCG-GCGCCGCccguaccaCGAa -3'
miRNA:   3'- cACGUCgUCUUGCuCGCGGCGua------GCU- -5'
24094 3' -56.3 NC_005262.1 + 30886 0.66 0.686818
Target:  5'- -aGCGGcCGGAugGuGaCGCCGCucgcgcUCGAg -3'
miRNA:   3'- caCGUC-GUCUugCuC-GCGGCGu-----AGCU- -5'
24094 3' -56.3 NC_005262.1 + 12331 0.66 0.686818
Target:  5'- cGUGCcGCAGcGCGcGGCGgCaGCAUUGAa -3'
miRNA:   3'- -CACGuCGUCuUGC-UCGCgG-CGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 63235 0.66 0.675994
Target:  5'- -aGCGGUuGGGCGAGCGgUCGCGcaCGAa -3'
miRNA:   3'- caCGUCGuCUUGCUCGC-GGCGUa-GCU- -5'
24094 3' -56.3 NC_005262.1 + 14243 0.66 0.66513
Target:  5'- -cGCacgAGCAGGACGcAGCGUCGC--CGGa -3'
miRNA:   3'- caCG---UCGUCUUGC-UCGCGGCGuaGCU- -5'
24094 3' -56.3 NC_005262.1 + 12814 0.66 0.66513
Target:  5'- -cGCAGCcggcgcgugaAGAAgGAGCGCgGCcUCGc -3'
miRNA:   3'- caCGUCG----------UCUUgCUCGCGgCGuAGCu -5'
24094 3' -56.3 NC_005262.1 + 52200 0.66 0.66513
Target:  5'- cGUGCAGgAGu-CGaAGCGCCuGCA-CGAc -3'
miRNA:   3'- -CACGUCgUCuuGC-UCGCGG-CGUaGCU- -5'
24094 3' -56.3 NC_005262.1 + 5190 0.66 0.66513
Target:  5'- gGUGCAGCGcauCGAgGCGCCcCAUCa- -3'
miRNA:   3'- -CACGUCGUcuuGCU-CGCGGcGUAGcu -5'
24094 3' -56.3 NC_005262.1 + 23414 0.66 0.66513
Target:  5'- aUGCGGCGGGcagcAUGAGC-CgCGuCAUCGAg -3'
miRNA:   3'- cACGUCGUCU----UGCUCGcG-GC-GUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 29453 0.66 0.66513
Target:  5'- cUGCGGCAGAgGCGcaGGuCGCCGaggCGAa -3'
miRNA:   3'- cACGUCGUCU-UGC--UC-GCGGCguaGCU- -5'
24094 3' -56.3 NC_005262.1 + 3824 0.66 0.658596
Target:  5'- gGUGCaugcgcgccugaucgAGCGGGcgaaucugcuucGCGAGCGCCuCGUCGu -3'
miRNA:   3'- -CACG---------------UCGUCU------------UGCUCGCGGcGUAGCu -5'
24094 3' -56.3 NC_005262.1 + 28991 0.66 0.654235
Target:  5'- -aGCAGCAcGGCGAGaaggagcucaGCCuCAUCGAg -3'
miRNA:   3'- caCGUCGUcUUGCUCg---------CGGcGUAGCU- -5'
24094 3' -56.3 NC_005262.1 + 40307 0.66 0.654235
Target:  5'- -cGCAGCAGuucAACcccGGCGaCCGCuUCGAg -3'
miRNA:   3'- caCGUCGUC---UUGc--UCGC-GGCGuAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.