miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24096 5' -60.8 NC_005262.1 + 43073 0.66 0.478846
Target:  5'- aGCUGCcgaGCGACGCgaccgugaugGGCUGCG-CCUUc -3'
miRNA:   3'- aCGACG---UGCUGUG----------CCGGCGCaGGGAc -5'
24096 5' -60.8 NC_005262.1 + 470 0.66 0.478846
Target:  5'- cGUUGaccucgGCGACGCGGCgCGCGUguUCCa- -3'
miRNA:   3'- aCGACg-----UGCUGUGCCG-GCGCA--GGGac -5'
24096 5' -60.8 NC_005262.1 + 2760 0.66 0.478846
Target:  5'- cGCUucaGCACGGCgGCGgguGCCGCaUCCUUGu -3'
miRNA:   3'- aCGA---CGUGCUG-UGC---CGGCGcAGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 24823 0.66 0.478846
Target:  5'- aGCU-CGCGAuCGCGGCCgGCG-CCgUGc -3'
miRNA:   3'- aCGAcGUGCU-GUGCCGG-CGCaGGgAC- -5'
24096 5' -60.8 NC_005262.1 + 42116 0.66 0.468198
Target:  5'- aGCaGCGCGGCGCcGCCGCucagguugcgcguGUCCUUc -3'
miRNA:   3'- aCGaCGUGCUGUGcCGGCG-------------CAGGGAc -5'
24096 5' -60.8 NC_005262.1 + 47742 0.66 0.4501
Target:  5'- cUGgUGCGCcGC-CGGCCGCGgcgaaCCCg- -3'
miRNA:   3'- -ACgACGUGcUGuGCCGGCGCa----GGGac -5'
24096 5' -60.8 NC_005262.1 + 41123 0.66 0.4501
Target:  5'- cGuCUGCGC-ACugGuCCGCG-CCCUGa -3'
miRNA:   3'- aC-GACGUGcUGugCcGGCGCaGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 52856 0.66 0.4501
Target:  5'- cUGCUGCGCGuaGCGCGGCuCGaUGUCg--- -3'
miRNA:   3'- -ACGACGUGC--UGUGCCG-GC-GCAGggac -5'
24096 5' -60.8 NC_005262.1 + 63296 0.66 0.444465
Target:  5'- gGCUGCuggcuCGGCgucgacguggaacacGCGcGCCGCGUCgCCg- -3'
miRNA:   3'- aCGACGu----GCUG---------------UGC-CGGCGCAG-GGac -5'
24096 5' -60.8 NC_005262.1 + 22212 0.66 0.44073
Target:  5'- gGCUcGCGCucgacaagcuCACGGCCGCGccgCCCa- -3'
miRNA:   3'- aCGA-CGUGcu--------GUGCCGGCGCa--GGGac -5'
24096 5' -60.8 NC_005262.1 + 49743 0.66 0.431472
Target:  5'- aGCcGCAcCGACGcCGGCgGCG-CCCg- -3'
miRNA:   3'- aCGaCGU-GCUGU-GCCGgCGCaGGGac -5'
24096 5' -60.8 NC_005262.1 + 63718 0.66 0.431472
Target:  5'- gUGCgGCGCGGCcgacuucuucGCGaGCCGCGgccUCCCc- -3'
miRNA:   3'- -ACGaCGUGCUG----------UGC-CGGCGC---AGGGac -5'
24096 5' -60.8 NC_005262.1 + 59238 0.67 0.414201
Target:  5'- cGCUgGCGCGAgAUGcGCCGCGcgcgcacgaugaagcCCCUGu -3'
miRNA:   3'- aCGA-CGUGCUgUGC-CGGCGCa--------------GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 38851 0.67 0.413303
Target:  5'- aGCUGgGCGcgccGCGCGGCCauguGCGcaUCCCg- -3'
miRNA:   3'- aCGACgUGC----UGUGCCGG----CGC--AGGGac -5'
24096 5' -60.8 NC_005262.1 + 45633 0.67 0.413303
Target:  5'- cGCUcGCGCGAUcagGCgGGCaCGCGcUCCCg- -3'
miRNA:   3'- aCGA-CGUGCUG---UG-CCG-GCGC-AGGGac -5'
24096 5' -60.8 NC_005262.1 + 16055 0.67 0.413303
Target:  5'- cGCUacCGCGACuuGCGGCCGaCGaUCCUGa -3'
miRNA:   3'- aCGAc-GUGCUG--UGCCGGC-GCaGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 51684 0.67 0.413303
Target:  5'- cUGCUcGCGCG-CACGGCgGCGcugauugcgCCCg- -3'
miRNA:   3'- -ACGA-CGUGCuGUGCCGgCGCa--------GGGac -5'
24096 5' -60.8 NC_005262.1 + 5187 0.67 0.412408
Target:  5'- cGCggGCGCgGGCGCGGCCggcgcgaccgaggGCGUaUCCUGc -3'
miRNA:   3'- aCGa-CGUG-CUGUGCCGG-------------CGCA-GGGAC- -5'
24096 5' -60.8 NC_005262.1 + 19060 0.67 0.404398
Target:  5'- uUGCgagGCccuUGACGCcGCCGCGcUCCUUGa -3'
miRNA:   3'- -ACGa--CGu--GCUGUGcCGGCGC-AGGGAC- -5'
24096 5' -60.8 NC_005262.1 + 26275 0.67 0.404398
Target:  5'- cUGCcGCACGACGCGGaCCacguGCGUCa--- -3'
miRNA:   3'- -ACGaCGUGCUGUGCC-GG----CGCAGggac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.