miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 3' -62.9 NC_005262.1 + 48068 0.65 0.385336
Target:  5'- gUCGCaccugccgcgacgaGCCgCCCgGCGCCGaCGCGCg- -3'
miRNA:   3'- gAGUG--------------CGGaGGG-CGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 4249 0.66 0.379431
Target:  5'- cCUCGCGCUcCUCGUgGCCcauugCGCGCUUg -3'
miRNA:   3'- -GAGUGCGGaGGGCG-CGGca---GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 29289 0.66 0.379431
Target:  5'- -cCGCGUCgucucgcagaagUCgCGCGCCGcCGCGCg- -3'
miRNA:   3'- gaGUGCGG------------AGgGCGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 10969 0.66 0.379431
Target:  5'- uUCGCGCUgucggCGCGCCGggaacgccggUCGCGCUc -3'
miRNA:   3'- gAGUGCGGagg--GCGCGGC----------AGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 23061 0.66 0.378592
Target:  5'- -aCGCGCCgccgCCCGUGCucgagggCGUCaGCGCc- -3'
miRNA:   3'- gaGUGCGGa---GGGCGCG-------GCAG-CGCGaa -5'
24098 3' -62.9 NC_005262.1 + 59216 0.66 0.374417
Target:  5'- gCUCACGCCcgagcagcgCCgccgcuggcgcgagaUGCGCCG-CGCGCg- -3'
miRNA:   3'- -GAGUGCGGa--------GG---------------GCGCGGCaGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 3721 0.66 0.3711
Target:  5'- gUCAgCGCgUCgCGCGCggCGUUGCGCa- -3'
miRNA:   3'- gAGU-GCGgAGgGCGCG--GCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 22364 0.66 0.362895
Target:  5'- -cCGCGCCgCCCGUGUUaGUCgGCGCa- -3'
miRNA:   3'- gaGUGCGGaGGGCGCGG-CAG-CGCGaa -5'
24098 3' -62.9 NC_005262.1 + 13387 0.66 0.354817
Target:  5'- cCUCGCGCUccgcggcgcugaUCgCCGCGCgGuUCGCGUc- -3'
miRNA:   3'- -GAGUGCGG------------AG-GGCGCGgC-AGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 13860 0.66 0.354817
Target:  5'- gUCACGCCaUCCGgGCCgGUCGUcagGCg- -3'
miRNA:   3'- gAGUGCGGaGGGCgCGG-CAGCG---CGaa -5'
24098 3' -62.9 NC_005262.1 + 46304 0.66 0.346867
Target:  5'- aUCgACGCgUCgCGCGCgGcgCGCGCUUc -3'
miRNA:   3'- gAG-UGCGgAGgGCGCGgCa-GCGCGAA- -5'
24098 3' -62.9 NC_005262.1 + 21517 0.66 0.346867
Target:  5'- -aCACGUCgccggugCCCGUGCCGcUCGuCGCc- -3'
miRNA:   3'- gaGUGCGGa------GGGCGCGGC-AGC-GCGaa -5'
24098 3' -62.9 NC_005262.1 + 29798 0.67 0.323787
Target:  5'- gUCACGCCgUCCGCGCCcauGUUaCGCa- -3'
miRNA:   3'- gAGUGCGGaGGGCGCGG---CAGcGCGaa -5'
24098 3' -62.9 NC_005262.1 + 41958 0.67 0.323787
Target:  5'- -cCGCGCCUUgugCCGCGCCuGUUGC-CUg -3'
miRNA:   3'- gaGUGCGGAG---GGCGCGG-CAGCGcGAa -5'
24098 3' -62.9 NC_005262.1 + 19631 0.67 0.316352
Target:  5'- gCUCGcCGCCgcgcUCCUGC-CCGaUCGCGCg- -3'
miRNA:   3'- -GAGU-GCGG----AGGGCGcGGC-AGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 46003 0.67 0.309046
Target:  5'- uUCGCGuuCCUgCaCGCGCaaggCGUCGCGCUg -3'
miRNA:   3'- gAGUGC--GGAgG-GCGCG----GCAGCGCGAa -5'
24098 3' -62.9 NC_005262.1 + 50087 0.67 0.309046
Target:  5'- --uGCGCCgaccgaaCCCGCGCCG-CGCGa-- -3'
miRNA:   3'- gagUGCGGa------GGGCGCGGCaGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 3283 0.67 0.309046
Target:  5'- gUCACGCUcuuggcggCCUGCGCCG-CGCGg-- -3'
miRNA:   3'- gAGUGCGGa-------GGGCGCGGCaGCGCgaa -5'
24098 3' -62.9 NC_005262.1 + 58654 0.67 0.300451
Target:  5'- -gCGCGCCgagcaggaucagCgCCGC-CCGUCGCGCa- -3'
miRNA:   3'- gaGUGCGGa-----------G-GGCGcGGCAGCGCGaa -5'
24098 3' -62.9 NC_005262.1 + 28807 0.67 0.294823
Target:  5'- cCUCGCGCCcgcgcaUCUCGaGCucgCGUCGCGCUc -3'
miRNA:   3'- -GAGUGCGG------AGGGCgCG---GCAGCGCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.