miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 63657 0.72 0.128826
Target:  5'- cGGGCGAACUGGCUGGaauuGCCgGCGaCGgCg -3'
miRNA:   3'- -UCCGCUUGGCCGGCC----CGG-CGCaGCgG- -5'
24099 3' -64.8 NC_005262.1 + 63307 0.7 0.183638
Target:  5'- cGGCGucGACgUGGaacaCGcGcGCCGCGUCGCCg -3'
miRNA:   3'- uCCGC--UUG-GCCg---GC-C-CGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 61417 0.66 0.347669
Target:  5'- gAGGCGAaggcGgCGGCCGaGGaauuCCaCGUCGCg -3'
miRNA:   3'- -UCCGCU----UgGCCGGC-CC----GGcGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 61169 0.72 0.119234
Target:  5'- cGGGCGAGCUGa-CGGGCgCGCGgCGCUa -3'
miRNA:   3'- -UCCGCUUGGCcgGCCCG-GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 60820 0.66 0.340045
Target:  5'- gAGGcCGAuuGCCcgauGCCGGGCaGCGUgagUGCCc -3'
miRNA:   3'- -UCC-GCU--UGGc---CGGCCCGgCGCA---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 60492 0.76 0.061732
Target:  5'- aGGGCGAGac-GCCGGGCCGCGcggCGCa -3'
miRNA:   3'- -UCCGCUUggcCGGCCCGGCGCa--GCGg -5'
24099 3' -64.8 NC_005262.1 + 60191 0.66 0.340045
Target:  5'- uGGGCGGcaACCGGCaaggagccGGCCgGCGagGUCg -3'
miRNA:   3'- -UCCGCU--UGGCCGgc------CCGG-CGCagCGG- -5'
24099 3' -64.8 NC_005262.1 + 60152 0.66 0.303757
Target:  5'- uGGGCGAAguacCCGGCC--GCCGUGaaggCGCUc -3'
miRNA:   3'- -UCCGCUU----GGCCGGccCGGCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 59696 0.68 0.252021
Target:  5'- cGGCGuGCCGccacGCgGGcGCUaCGUCGCCg -3'
miRNA:   3'- uCCGCuUGGC----CGgCC-CGGcGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 59130 1.11 0.000132
Target:  5'- gAGGCGAACCGGCCGGGCCGCGUCGCCg -3'
miRNA:   3'- -UCCGCUUGGCCGGCCCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 58952 0.66 0.320793
Target:  5'- cGGCGcgcagcagucgaaccAGCCGGCCGccGGCgGCcucaCGCCu -3'
miRNA:   3'- uCCGC---------------UUGGCCGGC--CCGgCGca--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 58763 0.67 0.290099
Target:  5'- cAGGC--GCCGGCCGGcgagcaacuGCCGCuGgaggcaGCCg -3'
miRNA:   3'- -UCCGcuUGGCCGGCC---------CGGCG-Cag----CGG- -5'
24099 3' -64.8 NC_005262.1 + 58706 0.72 0.135612
Target:  5'- cGGGCGcgcaccGCCGaGCCGGucGCaCGCGcCGCCg -3'
miRNA:   3'- -UCCGCu-----UGGC-CGGCC--CG-GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 58605 0.68 0.251422
Target:  5'- cGGuCGcGCCGGCCGcGCCcgcgcccGCGaCGCCg -3'
miRNA:   3'- uCC-GCuUGGCCGGCcCGG-------CGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 58566 0.66 0.306548
Target:  5'- cGGCGAgaagcugaucggcacGCCGGCauggaauGGGCUGaUGgggCGCCu -3'
miRNA:   3'- uCCGCU---------------UGGCCGg------CCCGGC-GCa--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 57483 0.73 0.104713
Target:  5'- aGGGCGAgaaGCCGGCCGacgaGGCgccgaaguucaGCGUCGCg -3'
miRNA:   3'- -UCCGCU---UGGCCGGC----CCGg----------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 56767 0.69 0.204226
Target:  5'- cGGGCGAcgagcgcuacaugaaGCUGGCCGgccugaaGGCCGaCGUCGa- -3'
miRNA:   3'- -UCCGCU---------------UGGCCGGC-------CCGGC-GCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 56639 0.69 0.220286
Target:  5'- cGGC-AugCGGCCGGGUguuucgccuguuugGCGUCGCa -3'
miRNA:   3'- uCCGcUugGCCGGCCCGg-------------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 55781 0.66 0.303757
Target:  5'- -cGCGAGCCGGa-GGGCCuuUGcCGCCu -3'
miRNA:   3'- ucCGCUUGGCCggCCCGGc-GCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 55625 0.68 0.234575
Target:  5'- -uGCGcAGCaagaaGCCGGGCCGCG-CGCUc -3'
miRNA:   3'- ucCGC-UUGgc---CGGCCCGGCGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.