Results 1 - 20 of 171 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 13480 | 0.66 | 0.347669 |
Target: 5'- cGGCGGGCgcugCGGCCGGcuccucaauCCGCG-CgGCCg -3' miRNA: 3'- uCCGCUUG----GCCGGCCc--------GGCGCaG-CGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 54648 | 0.67 | 0.296867 |
Target: 5'- cGGGUGAuccgcauuccgACCGGcCCGGcGCCG-GUCcucauaGCCg -3' miRNA: 3'- -UCCGCU-----------UGGCC-GGCC-CGGCgCAG------CGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 52024 | 0.67 | 0.290099 |
Target: 5'- aGGaGCGcGCCcaGGUCGGGCCGC---GCCa -3' miRNA: 3'- -UC-CGCuUGG--CCGGCCCGGCGcagCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 19969 | 0.81 | 0.024642 |
Target: 5'- -cGCGcGGCCGGcCCGcGGCCGUGUCGCCg -3' miRNA: 3'- ucCGC-UUGGCC-GGC-CCGGCGCAGCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 50839 | 0.66 | 0.339289 |
Target: 5'- cGcCGAGCCGGUCGGcgaugccGUCGCGcaCGCCc -3' miRNA: 3'- uCcGCUUGGCCGGCC-------CGGCGCa-GCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 10639 | 0.66 | 0.325162 |
Target: 5'- aGGGCGggUU-GCCGaucGCCGCGUCGa- -3' miRNA: 3'- -UCCGCuuGGcCGGCc--CGGCGCAGCgg -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 13225 | 0.66 | 0.323701 |
Target: 5'- cGGC-AGCgGGCuCGGGCUGCGguugaacgggugCGCg -3' miRNA: 3'- uCCGcUUGgCCG-GCCCGGCGCa-----------GCGg -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 29646 | 0.66 | 0.322973 |
Target: 5'- cGGCGAcgGCCGG-CGGGUagacguagaagaugCGCGgugCGCg -3' miRNA: 3'- uCCGCU--UGGCCgGCCCG--------------GCGCa--GCGg -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 3590 | 0.66 | 0.31077 |
Target: 5'- uGcCGAccucGCCGGCCGGcuccuuGCCG-GUUGCCg -3' miRNA: 3'- uCcGCU----UGGCCGGCC------CGGCgCAGCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 22310 | 0.66 | 0.301677 |
Target: 5'- cGGUGAcggugugauugugcGCCGGCaucuGGGCUGCGgucagCGUa -3' miRNA: 3'- uCCGCU--------------UGGCCGg---CCCGGCGCa----GCGg -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 945 | 0.66 | 0.309357 |
Target: 5'- cGGGCGugccauccucguACCGcgucgaGCCGuGGCCGaucgucggcaCGUCGCCu -3' miRNA: 3'- -UCCGCu-----------UGGC------CGGC-CCGGC----------GCAGCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 8949 | 0.66 | 0.317905 |
Target: 5'- uGaCGAGCCGGUCGGcgcGCUGCGU-GUCg -3' miRNA: 3'- uCcGCUUGGCCGGCC---CGGCGCAgCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 2543 | 0.66 | 0.347669 |
Target: 5'- --aCGAACUGGCCcaGGCCGCcgguguagGUgCGCCa -3' miRNA: 3'- uccGCUUGGCCGGc-CCGGCG--------CA-GCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 55781 | 0.66 | 0.303757 |
Target: 5'- -cGCGAGCCGGa-GGGCCuuUGcCGCCu -3' miRNA: 3'- ucCGCUUGGCCggCCCGGc-GCaGCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 38045 | 0.66 | 0.340045 |
Target: 5'- -cGCGGGCCGugagcggcuuGCCGGcCUGCGcgaUCGCCu -3' miRNA: 3'- ucCGCUUGGC----------CGGCCcGGCGC---AGCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 21510 | 0.66 | 0.317905 |
Target: 5'- -cGCGAgaacacgucGCCGGugcCCGuGCCGCucGUCGCCg -3' miRNA: 3'- ucCGCU---------UGGCC---GGCcCGGCG--CAGCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 9781 | 0.66 | 0.303757 |
Target: 5'- uAGGCGAGCaGGUU--GCCGUGcuUCGCCg -3' miRNA: 3'- -UCCGCUUGgCCGGccCGGCGC--AGCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 58763 | 0.67 | 0.290099 |
Target: 5'- cAGGC--GCCGGCCGGcgagcaacuGCCGCuGgaggcaGCCg -3' miRNA: 3'- -UCCGcuUGGCCGGCC---------CGGCG-Cag----CGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 60820 | 0.66 | 0.340045 |
Target: 5'- gAGGcCGAuuGCCcgauGCCGGGCaGCGUgagUGCCc -3' miRNA: 3'- -UCC-GCU--UGGc---CGGCCCGgCGCA---GCGG- -5' |
|||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 32583 | 0.66 | 0.324431 |
Target: 5'- cAGGCGcgcgaucuugccuGACUuGUCGGcgagcgugaucGUCGCGUCGCCg -3' miRNA: 3'- -UCCGC-------------UUGGcCGGCC-----------CGGCGCAGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home