miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 3' -55.9 NC_005262.1 + 23061 0.66 0.729486
Target:  5'- aCGCGCCgccGCccguGCUCGAGG-GCgucaGCg -3'
miRNA:   3'- -GUGCGGacuUGu---CGAGCUCCuCGa---CG- -5'
24100 3' -55.9 NC_005262.1 + 36181 0.66 0.708299
Target:  5'- gGCGCgaGuGCAGCUCGAcGGccuguucGCUGUc -3'
miRNA:   3'- gUGCGgaCuUGUCGAGCU-CCu------CGACG- -5'
24100 3' -55.9 NC_005262.1 + 48688 0.66 0.708299
Target:  5'- cCACGCCUucAgGGCgUCGGGuuucGAGUUGCc -3'
miRNA:   3'- -GUGCGGAcuUgUCG-AGCUC----CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 56497 0.66 0.708299
Target:  5'- aGCGCCUcuACAGC--GAGGAGCa-- -3'
miRNA:   3'- gUGCGGAcuUGUCGagCUCCUCGacg -5'
24100 3' -55.9 NC_005262.1 + 59305 0.66 0.708299
Target:  5'- aCAUGCCgGAcgGCGGCUCG-GGcaugacgacGGCUGa -3'
miRNA:   3'- -GUGCGGaCU--UGUCGAGCuCC---------UCGACg -5'
24100 3' -55.9 NC_005262.1 + 28962 0.66 0.708299
Target:  5'- gCGCGCgaGGA-AG-UCGGGGAGCUGa -3'
miRNA:   3'- -GUGCGgaCUUgUCgAGCUCCUCGACg -5'
24100 3' -55.9 NC_005262.1 + 55807 0.66 0.69759
Target:  5'- aACGCCgccGGCGGCUaCGAGGucgugAGCcGCu -3'
miRNA:   3'- gUGCGGac-UUGUCGA-GCUCC-----UCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 51396 0.66 0.69759
Target:  5'- cCGCGCCUGAccgugugcaccGCGuGCUCGGcGGcGC-GCg -3'
miRNA:   3'- -GUGCGGACU-----------UGU-CGAGCU-CCuCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 61141 0.66 0.69759
Target:  5'- gACGCgCUGGcgcagcagaucGCGGCggCGGGcGAGCUGa -3'
miRNA:   3'- gUGCG-GACU-----------UGUCGa-GCUC-CUCGACg -5'
24100 3' -55.9 NC_005262.1 + 15496 0.66 0.686817
Target:  5'- aGCGC---GGCGGCUCGcucaccGGcGAGCUGCa -3'
miRNA:   3'- gUGCGgacUUGUCGAGC------UC-CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 45060 0.66 0.686817
Target:  5'- aCGCGCC-GAGCcgcgccgaAGCU-GAGGAGC-GCc -3'
miRNA:   3'- -GUGCGGaCUUG--------UCGAgCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 61156 0.66 0.685737
Target:  5'- cCGCGCaggcaUGGGCcgaucuggucaagGGUaUCGAGGAGCUGg -3'
miRNA:   3'- -GUGCGg----ACUUG-------------UCG-AGCUCCUCGACg -5'
24100 3' -55.9 NC_005262.1 + 41066 0.66 0.683575
Target:  5'- uCGCGCCUccuuCGGCUCGucGAGCauccagucgauccaUGCg -3'
miRNA:   3'- -GUGCGGAcuu-GUCGAGCucCUCG--------------ACG- -5'
24100 3' -55.9 NC_005262.1 + 58909 0.66 0.675994
Target:  5'- uCACGCCgaAGCAGgUCGAgucggcgcucGGcaAGCUGCg -3'
miRNA:   3'- -GUGCGGacUUGUCgAGCU----------CC--UCGACG- -5'
24100 3' -55.9 NC_005262.1 + 21673 0.66 0.675994
Target:  5'- aCGCGCaacCUGAGCGGCggCGccGcGCUGCu -3'
miRNA:   3'- -GUGCG---GACUUGUCGa-GCucCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 33496 0.66 0.675994
Target:  5'- uCGgGCCUGAc--GCUCGAGGA-CUGg -3'
miRNA:   3'- -GUgCGGACUuguCGAGCUCCUcGACg -5'
24100 3' -55.9 NC_005262.1 + 13797 0.67 0.665129
Target:  5'- gGCGCCgGcGCGGCuucaUCGgcGGGAGCggGCg -3'
miRNA:   3'- gUGCGGaCuUGUCG----AGC--UCCUCGa-CG- -5'
24100 3' -55.9 NC_005262.1 + 52459 0.67 0.665129
Target:  5'- gACGCagggGAacccGCAGUaCGAGGAGCaGCc -3'
miRNA:   3'- gUGCGga--CU----UGUCGaGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 43452 0.67 0.665129
Target:  5'- aCGCGCUUGuGCGGaUCGAGucGAGCcGCu -3'
miRNA:   3'- -GUGCGGACuUGUCgAGCUC--CUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 12433 0.67 0.643319
Target:  5'- gGCGUCgcGGACGGCgcggUGccGAGCUGCa -3'
miRNA:   3'- gUGCGGa-CUUGUCGa---GCucCUCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.