Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 3' | -51.8 | NC_005262.1 | + | 50830 | 0.66 | 0.911301 |
Target: 5'- gGUCGUCGaCGccGAGccgGUCGGCGAUGCc -3' miRNA: 3'- -UAGUAGC-GU--UUCaugCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 37154 | 0.66 | 0.89032 |
Target: 5'- aGUCAg-GC--GGUGCGCCaGCuACGCg -3' miRNA: 3'- -UAGUagCGuuUCAUGCGGcCGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 56316 | 0.66 | 0.89032 |
Target: 5'- uUCAggacCGCGGauAGccCGCUGGCGugGCa -3' miRNA: 3'- uAGUa---GCGUU--UCauGCGGCCGUugCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17035 | 0.77 | 0.320809 |
Target: 5'- -gCGUCGCcgccuGUACGaCCGGCGugGCg -3' miRNA: 3'- uaGUAGCGuuu--CAUGC-GGCCGUugCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 59243 | 0.66 | 0.911301 |
Target: 5'- ----gCGCGAGaUGCGCCGcGC-GCGCa -3' miRNA: 3'- uaguaGCGUUUcAUGCGGC-CGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 43662 | 0.66 | 0.911301 |
Target: 5'- --uGUCGagcuGGUGCGUCGGCAGgGg -3' miRNA: 3'- uagUAGCguu-UCAUGCGGCCGUUgCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 2084 | 0.66 | 0.911301 |
Target: 5'- -----aGCAGAGcGCGCCGaGCGaacccgGCGCg -3' miRNA: 3'- uaguagCGUUUCaUGCGGC-CGU------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 52639 | 0.66 | 0.910643 |
Target: 5'- cGUUGUCGCAGGgccgcccGUGCGaCCGGagccACGCc -3' miRNA: 3'- -UAGUAGCGUUU-------CAUGC-GGCCgu--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 63651 | 0.66 | 0.904589 |
Target: 5'- --uGUCGCu--GU-CuCCGGCGACGCu -3' miRNA: 3'- uagUAGCGuuuCAuGcGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 3720 | 0.66 | 0.89032 |
Target: 5'- cGUCAgCGCGuc--GCGCgCGGCGuuGCGCa -3' miRNA: 3'- -UAGUaGCGUuucaUGCG-GCCGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 52125 | 0.66 | 0.904589 |
Target: 5'- -gCG-CGCGAAGcucUGCCGGcCAGCGUg -3' miRNA: 3'- uaGUaGCGUUUCau-GCGGCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 22307 | 0.66 | 0.907308 |
Target: 5'- --gAUCGguGAcggugugauuGUGCGCCGGCAucugggcugcggucaGCGUa -3' miRNA: 3'- uagUAGCguUU----------CAUGCGGCCGU---------------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 46453 | 0.66 | 0.911301 |
Target: 5'- gAUCuucUCGCGGAu--CGCCG-CGACGCg -3' miRNA: 3'- -UAGu--AGCGUUUcauGCGGCcGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 41550 | 0.66 | 0.904589 |
Target: 5'- cGUgAUgCGCAGgccGGccgGCGUgGGCGGCGCg -3' miRNA: 3'- -UAgUA-GCGUU---UCa--UGCGgCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 39396 | 0.66 | 0.911301 |
Target: 5'- cAUCAccuUCGCGGAcGUGCgcgccGCCGGUuuGGCGUc -3' miRNA: 3'- -UAGU---AGCGUUU-CAUG-----CGGCCG--UUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 9752 | 0.66 | 0.910643 |
Target: 5'- cGUCGUCGCcc-GUGCGCUcgauggugcuguaGGCGA-GCa -3' miRNA: 3'- -UAGUAGCGuuuCAUGCGG-------------CCGUUgCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 30569 | 0.66 | 0.897594 |
Target: 5'- -gCGUCGauguugACGUCGGCAAUGUg -3' miRNA: 3'- uaGUAGCguuucaUGCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 14439 | 0.66 | 0.89032 |
Target: 5'- -gCGUCGCcGAGU-CGUCaGCgAGCGCg -3' miRNA: 3'- uaGUAGCGuUUCAuGCGGcCG-UUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17070 | 0.66 | 0.911301 |
Target: 5'- gAUCcgGUCGUgccGGAuUGCGCCGGCuuguccacuGCGCg -3' miRNA: 3'- -UAG--UAGCG---UUUcAUGCGGCCGu--------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17206 | 0.66 | 0.911301 |
Target: 5'- -gCGUCugcgGCGAGGacgGCGCUGGCGuCGUg -3' miRNA: 3'- uaGUAG----CGUUUCa--UGCGGCCGUuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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