miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 63699 0.66 0.332871
Target:  5'- cGGUGaCaUGCGCAGaa-GCGUGCGGCg -3'
miRNA:   3'- uCCGC-GaGCGCGUCgucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 62712 0.69 0.185429
Target:  5'- uGGGUaaUCGCGCAcGCAcccugaucGGCGCGCuGGCg -3'
miRNA:   3'- -UCCGcgAGCGCGU-CGU--------CCGCGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 62672 0.66 0.332871
Target:  5'- uGGGUuuaGUcCGCccggcgGCGGCAGGggaGCGCGACg -3'
miRNA:   3'- -UCCG---CGaGCG------CGUCGUCCg--CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 61148 0.77 0.045926
Target:  5'- uGGCGCagcagaUCGCgGCGGCgggcgagcugacGGGCGCGCGGCg -3'
miRNA:   3'- uCCGCG------AGCG-CGUCG------------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60504 0.67 0.275805
Target:  5'- cGG-GC-CGCGCGgcGCAGGCcgccaagaGCGUGACg -3'
miRNA:   3'- uCCgCGaGCGCGU--CGUCCG--------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60424 0.68 0.221257
Target:  5'- gGGGCGCauagcaUCGUGCGGCAucuaGCGagcCGCGGCc -3'
miRNA:   3'- -UCCGCG------AGCGCGUCGUc---CGC---GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60176 0.68 0.221257
Target:  5'- aAGGCGCUCgGC-CAGUGGGCgGCaacCGGCa -3'
miRNA:   3'- -UCCGCGAG-CGcGUCGUCCG-CGc--GCUG- -5'
24101 5' -63.9 NC_005262.1 + 60126 0.67 0.282488
Target:  5'- aGGGCGCcagCGuCGCGGCgaAGGCauGgGCGAa -3'
miRNA:   3'- -UCCGCGa--GC-GCGUCG--UCCG--CgCGCUg -5'
24101 5' -63.9 NC_005262.1 + 60060 0.71 0.135834
Target:  5'- cGGCGUUCauccuGCGCAacGCc-GCGCGCGACg -3'
miRNA:   3'- uCCGCGAG-----CGCGU--CGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 59948 0.76 0.059513
Target:  5'- gAGGCGCUCGCgaaGCAGauucgcccgcucgauCAGGCGCGCa-- -3'
miRNA:   3'- -UCCGCGAGCG---CGUC---------------GUCCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 59711 0.66 0.29206
Target:  5'- cGGGCGCUaCGuCGcCGGCaAGGUGUacaacgugguggaugGCGGCg -3'
miRNA:   3'- -UCCGCGA-GC-GC-GUCG-UCCGCG---------------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 59473 0.68 0.220706
Target:  5'- cGGCccgcgagGCUCGcCGUAGUcgacgaugagGGGCGCGUGAUu -3'
miRNA:   3'- uCCG-------CGAGC-GCGUCG----------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 59385 1.09 0.000163
Target:  5'- cAGGCGCUCGCGCAGCAGGCGCGCGACa -3'
miRNA:   3'- -UCCGCGAGCGCGUCGUCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 59211 0.69 0.190215
Target:  5'- cGGGCGCUCaCGCccgAGCAGcGCcgccgcugGCGCGAg -3'
miRNA:   3'- -UCCGCGAGcGCG---UCGUC-CG--------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 58934 0.66 0.296239
Target:  5'- uGGCGCgCGCuucuCGGUcGGCGCGCaGCa -3'
miRNA:   3'- uCCGCGaGCGc---GUCGuCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 58930 0.71 0.135834
Target:  5'- cGGCGCUCG-GCaAGCu-GCGCcGCGACa -3'
miRNA:   3'- uCCGCGAGCgCG-UCGucCGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 58633 0.7 0.167334
Target:  5'- cAGGCucgGCagUCGaGCGGcCGGGCGCGCGAg -3'
miRNA:   3'- -UCCG---CG--AGCgCGUC-GUCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 58121 0.71 0.150839
Target:  5'- uGGGUGCcgaUgGUGCAGUAccucccgauGGUGCGCGGCa -3'
miRNA:   3'- -UCCGCG---AgCGCGUCGU---------CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 57956 0.67 0.256513
Target:  5'- aGGGCGCgagCGCGCuugaaauuGGCGCGCc-- -3'
miRNA:   3'- -UCCGCGa--GCGCGucgu----CCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 57749 0.67 0.262818
Target:  5'- aAGGCGCUCgagggcauuGCGC-GCAauGGCGUGCugguuGGCg -3'
miRNA:   3'- -UCCGCGAG---------CGCGuCGU--CCGCGCG-----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.